Input parameters:

  Query = Y76A2B.1 (Len=1057)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y76A2B.1, Len=1057):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAWRFAASKFKNTTPKVPKKEETIFDVPVGNLSCTNDGIHASADFLAFHIEGEGGKLGVLPITAKGRRTRNDIGIIAAHG 80  
WD40-rpts                                                                          (___________

Query       81 EQVADFGFLTFADELLATCSRDEPVKIWKLSRDHSPKLATEIDVGGGNVIAECLRAHSTADNILAVGSHGSTYITDISTG 160 
WD40-rpts      _______WD 1_________________)(_____________________WD 2____________________)   (

Query      161 KTAVELSGVTDKVQSMDWSEDGKLLAVSGDKGRQIVVYDPRASMEPIQTLEGHGGMGREARVLFAGNRLISTGFTTKRIQ 240 
WD40-rpts      _________________WD 3_________________)(_____________________WD 4_______________

Query      241 EVRAYDTGKWGAPVHTQEFVSTTGVLIPHYDADTRLVFLSGKGTNKLFMLEMQDRQPYLSHVFELTLPEQTLGATIGAKR 320 
WD40-rpts      _____)(____________________WD 5___________________)                             

Query      321 RVHVMDGEVDTYYQLTKSSIVPTPCIVPRRSYRDFHSDLFPETRGAEPGCTAGEWLNGTNAVPQKVSMAPSQSSSSPPPP 400 
WD40-rpts                                                                                      

Query      401 EPVPTPKVAQTPAPVPVPTPAAAPRPMSNNNSSSNNVPSVQEQHSVPKKEEVRELDYRPYEKENGVHTPNAETNSTQGNS 480 
WD40-rpts                                                                                      

Query      481 SPISTISPEPVTIVKPASTPATDSVSTPSVVGPAFGKKVPEQPPVNFRKPIGASNRVPLSQRVRPKSCVVGQITSKFRHV 560 
WD40-rpts                                                                                      

Query      561 DGQQGTKSGAVFSNLRNVNTRLPPESNGVCCSNKFAAVPLAGLGVIGIYDVNEPGKLPDGVMDGIFNKTLVTDLHWNPFD 640 
WD40-rpts                (_________________WD 6_________________)       (_________________WD 7_

Query      641 DEQLAVGTDCGQINLWRLTTNDGPRNEMEPEKIIKIGGEKITSLRWHPLASDLLAVALSNSTIELWDVANAKLYSRFVNH 720 
WD40-rpts      ________________)          (_________________WD 8_________________)   (_________

Query      721 TGGILGIAWSADGRRIASVGKDATLFVHEPASREQRVYERKTVVESTRAARVLFACDDRIVIVVGMTKSSQRQVQMYDAQ 800 
WD40-rpts      ________WD 9________________)(______________________WD10_____________________)(_

Query      801 TVDLRHIYTQVIDSATQPLVPHYDYDSNVLFLSGKGDRFVNMFEVIYDSPYLLPLAPFMSPVGSQGIAFHQKLKCNVMAV 880 
WD40-rpts      ___________________WD11____________________)                                    

Query      881 EFQVCWRLSDKNLEKITFRVPRIKKDVFQDDLFPDSLVTWEPVTTGTKWMLGEQAAPVFRSLKPDGVFSSIPRAITASVR 960 
WD40-rpts                                                                                      

Query      961 HSEMPSSSSTTNSAAQTPSTSVTHSTTEKHHHHQHHQHQEPTSVPTPSSRNMQSCGVESTQQPDRKQVAAAWSTKIDVDT 1040
WD40-rpts                                                                                      

Query     1041 RLEQDQMEGVDEAEWDK 1057
WD40-rpts                       

11 WD40-repeats found in QUERY=Y76A2B.1 (Len=1057):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    69-109      8.47  464.67  3.4e-05       22.5%     52.26
  WD 2:  Seg  9   110-156      6.08  365.95  0.00073        7.5%     46.67
  WD 3:  Seg 12   160-199      7.80  436.95  8.0e-05       42.5%     49.41
  WD 4:  Seg 16   200-246      5.19  329.00  0.00229       25.0%     36.19
  WD 5:  Seg 20   247-291      4.47  299.25  0.00576       20.0%     36.07
  WD 6:  Seg 31   571-610      3.37  253.71  0.02347       15.0%     31.80
  WD 7:  Seg 35   618-657      6.75  393.54  0.00031       22.5%     45.76
  WD 8:  Seg 39   668-707      6.33  375.96  0.00053       22.5%     52.19
  WD 9:  Seg 43   711-749      8.91  482.80  1.9e-05       27.5%     54.18
  WD10:  Seg 47   750-798      3.20  247.05  0.02879       15.0%     37.38
  WD11:  Seg 51   799-844      3.30  250.80  0.02567       10.0%     54.07

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   69-109    TR---N-------DIGIIA----AHGEQVADFGFLTFADE-LL-A----T----CSRDEPVKIWK
   WD 2  110-156    LS---RDHSPKLATEIDVG----GGNVIAECLRAHS-TAD-NI-L----A----VGSHGSTYITD
   WD 3  160-199    -G---K-------TAVELS----GVTDKVQSMDWSE-DGK-LL-A---VS----GDKGRQIVVYD
   WD 4  200-246    PRASME-------PIQTLE----GHGGMGREARVLF-AGN-RL-I----STGFTTKRIQEVRAYD
   WD 5  247-291    TG---K-------WGAPVHTQEFVSTTGVLIPHYDA-DTR-LVFL----S----GKGTNKLFMLE
   WD 6  571-610    VF---S-------NLRNVN----TRLPPESNGVCCS-NKF-AA-V----P----LAGLGVIGIYD
   WD 7  618-657    -P---D-------GVMDGI----FNKTLVTDLHWNPFDDE-QL-A----V----GTDCGQINLWR
   WD 8  668-707    -M---E-------PEKIIK----IGGEKITSLRWHP-LASDLL-A----V----ALSNSTIELWD
   WD 9  711-749    -A---K-------LYSRFV----NHTGGILGIAWSA-DGR-RI-A----S----VGKDATLFVHE
   WD10  750-798    PA---S--REQRVYERKTV----VESTRAARVLFAC-DDR-IV-IVVGMT----KSSQRQVQMYD
   WD11  799-844    AQ---T-VDLRHIYTQVID----SATQPLVPHYDYD-SNV-LF-L----S----GKGDRFVNMFE

   WD40 Template    TG---E-------CLRTLS----GHTSGVTSVSFSP-DGK-RL-V----S----GSEDGTIKVWD