Input parameters:

  Query = Y77E11A.13b (Len=211)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y77E11A.13b, Len=211):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTTVRQRIDTQHRDAIHDAQLNIYGSRLATCGSDRLVKIFEVRPNGQSYPMAELVGHSGPVWKVSWAHPKYGGLLASASY 80  
WD40-rpts       (_________________WD 1_________________)      (__________________WD 2__________

Query       81 DKKVIIWNEQQGRWQKAYEWAAHEASTTCVAFAPHQYGLMLASASADGDIGILRYDNSSNEWISSKIQKCHEQGVNSVCW 160 
WD40-rpts      _______)     (__________________WD 3_________________)  (______________________W

Query      161 APGSADPAAKKRLVSAGNDKNVKIWALSQFGAKIFRDNGSKCHVTIRNARE 211 
WD40-rpts      D 4______________________)                         

4 WD40-repeats found in QUERY=Y77E11A.13b (Len=211):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-41       9.50  506.99  9.1e-06       20.0%     56.91
  WD 2:  Seg  5    48-88       7.74  434.39  8.7e-05       30.0%     53.29
  WD 3:  Seg  9    94-134      7.50  424.47  0.00012       30.0%     54.92
  WD 4:  Seg 13   137-186      8.48  464.95  3.4e-05       35.0%     52.12

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-41     TTV----RQRIDTQHRDAIHDAQLN--IY--G------SRLATCGSDRLVKIFE
   WD 2   48-88     -SY----PMAELVGHSGPVWKVSWAHPKY--G------GLLASASYDKKVIIWN
   WD 3   94-134    -WQ----KAYEWAAHEASTTCVAFA--PHQYG------LMLASASADGDIGILR
   WD 4  137-186    NSSNEWISSKIQKCHEQGVNSVCWA--PG--SADPAAKKRLVSAGNDKNVKIWA

   WD40 Template    TGE----CLRTLSGHTSGVTSVSFS--PD--G------KRLVSGSEDGTIKVWD