Input parameters:

  Query = Y87G2A.6 (Len=629)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y87G2A.6, Len=629):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEPVFKEPSPKKKRVENPPENAPDAPKKPQLKHESEFLRSIPSSSQYEKSFMHRDTISHVIATKTDFIITASVDGHLKFW 80  
WD40-rpts                                             (__________________WD 1__________________

Query       81 KKKHSEGVEFVKHFRCHLSEFSHICANIDGTLLATVCEADKSVKVFDIENFDMINMIKLDFPPKTANWVHQSNDPIAHLA 160 
WD40-rpts      )      (_________________WD 2_________________)                                 

Query      161 IGAADSGKIIVVDGKATAAPICIKDKLHSTPVKIIEYSQSLDIIVSIDESGMIECWNGERGDFQFPETKLTWEYKLETDL 240 
WD40-rpts                   (___________________WD 3___________________)(______________________

Query      241 YDFVKAKTIPVCATFDPSGLKLATFAEDRKIRIFNVKTGKLAQLIDETTQKYHCEAKENKNYGLQHMEWSRRLASEKEMD 320 
WD40-rpts      ____WD 4__________________________)                                             

Query      321 KDKKNSLKYTKICFDQSGNFLLYPTPIGVKVFNLVTNEVSRTIGRDEAIRFVAVSLCNALPDIRQKLQGAAITLETAAAD 400 
WD40-rpts                                                                                      

Query      401 NPTLNRKTDPDPLMVCCALRKNRFYLFTNTEPYNVEDDEGNPSVSGRDVFNERPKKEDLLTALDTEGGEKVLNKEAIIHT 480 
WD40-rpts                                                                                      

Query      481 SFGDITIRLFGDECPKTVENFCTHSRRGYYNGLTFHRVIKSFMIQTGDPSGKGTGGESIWGEDFEDEFHPRLRHDKPFKV 560 
WD40-rpts                                                                                      

Query      561 SMANAGGGNTNGSQFFITVCPADWLDGKNTLFGEVTAGMSVVQRINQVSTFERSGRPRESIQIMSISLK 629 
WD40-rpts                                                                           

4 WD40-repeats found in QUERY=Y87G2A.6 (Len=629):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    40-81       3.40  255.20  0.02243       17.5%     35.72
  WD 2:  Seg  4    88-127      4.51  301.03  0.00545       27.5%     49.57
  WD 3:  Seg 12   174-217      3.25  248.87  0.02723       22.5%     38.44
  WD 4:  Seg 16   218-275      3.65  265.43  0.01637       20.0%     50.57

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   40-81     SIP---------SSSQY----EKSFMHRD---------TISHVIATKTD-FIITASV-DGHLKFWK
   WD 2   88-127    -VE---------FVKHF----RC---HLS---------EFSHICANIDGTLLATVCEADKSVKVFD
   WD 3  174-217    GKA---------TAAPICIKDKL---HST---------PVKIIEYSQSLDIIVSIDE-SGMIECWN
   WD 4  218-275    GERGDFQFPETKLTWEY----KL---ETDLYDFVKAKTIPVCATFDPSGLKLATFAE-DRKIRIFN

   WD40 Template    TGE---------CLRTL----SG---HTS---------GVTSVSFSPDGKRLVSGSE-DGTIKVWD