Input parameters:

  Query = ZC302.2a (Len=501)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ZC302.2a, Len=501):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNPERQETISPKNVPFQPVPTPNQQSLQSRMLESNQAVPDAFQKVAAWNHYNAVATPPIGVPQTARPPSNQSPHPNPPGY 80  
WD40-rpts                                                                                    (_

Query       81 PYQSHQQQFHPLAIAFQQPFGLPQQVIYPPPPPGFTPHRVQVSPVGLLGPPGFFPQFAGSTTSQGNPSEVSVRTKSAEGT 160 
WD40-rpts      _________________WD 1_________________)                                         

Query      161 TGPIAPSITTKPTSTIQVAPPRDPVAPTTSSSGITKKPENGEFSLVKTISGHTKSVSVIKFSYCGKYLGTGSADKQIKVW 240 
WD40-rpts       (________________WD 2________________)   (_________________WD 3________________

Query      241 NTVDMTYLQTLASHQLGINDFSWSSNSQFIASASDDTTVKIFDVISGACLRTMRGHTNYVFCCSFNPQSSLIASAGFDET 320 
WD40-rpts      )   (_________________WD 4________________)   (_________________WD 5____________

Query      321 VRVWDFKTGLCVKCIPAHSDPITSISYNHDGNTMATSSYDGCIRVWDAASGSCLKTLVDTDHAPVTFVCFSPNGKYLLSA 400 
WD40-rpts      ____)   (_________________WD 6________________)   (_________________WD 7________

Query      401 QLDSSLKLWDPKKAKPLKYYNGHKNKKYCLFANMSVPLGKHIISGSEDGRILVWSIQTKQIVQILEGHTTPVLATDSHPT 480 
WD40-rpts      _________)   (__________________WD 8__________________)   (__________________WD 

Query      481 LNIIASGGLEPDNVIRIWRRN 501 
WD40-rpts      9_________________)  

9 WD40-repeats found in QUERY=ZC302.2a (Len=501):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    79-119      3.22  247.64  0.02827        7.5%     21.29
  WD 2:  Seg  6   162-199      6.13  367.88  0.00069       15.0%     35.49
  WD 3:  Seg  9   203-241     10.09  531.57  4.3e-06       45.0%     51.76
  WD 4:  Seg 13   245-283     10.02  528.58  4.7e-06       32.5%     57.14
  WD 5:  Seg 17   287-325     10.71  556.98  1.9e-06       45.0%     56.96
  WD 6:  Seg 21   329-367     10.56  550.98  2.3e-06       37.5%     56.43
  WD 7:  Seg 25   371-410      9.29  498.25  1.2e-05       47.5%     54.39
  WD 8:  Seg 29   414-455      8.62  470.54  2.8e-05       37.5%     55.89
  WD 9:  Seg 33   459-499      8.25  455.61  4.5e-05       27.5%     52.77

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   79-119    GYPYQSH-QQQFHPLAIAFQQ---PFGLPQQVIYPP--PPPGFTPHR
   WD 2  162-199    GPIAPSI-TTKPTSTIQVAP----PRD--PVAPTTS--SSGITKKPE
   WD 3  203-241    FSLVKTI-SGHTKSVSVIKFS---YCG--KYLGTGS--ADKQIKVWN
   WD 4  245-283    MTYLQTL-ASHQLGINDFSWS---SNS--QFIASAS--DDTTVKIFD
   WD 5  287-325    GACLRTM-RGHTNYVFCCSFN---PQS--SLIASAG--FDETVRVWD
   WD 6  329-367    GLCVKCI-PAHSDPITSISYN---HDG--NTMATSS--YDGCIRVWD
   WD 7  371-410    GSCLKTLVDTDHAPVTFVCFS---PNG--KYLLSAQ--LDSSLKLWD
   WD 8  414-455    AKPLKYY-NGHKNKKYCLFANMSVPLG--KHIISGS--EDGRILVWS
   WD 9  459-499    KQIVQIL-EGHTTPVLATDSH---PTL--NIIASGGLEPDNVIRIWR

   WD40 Template    GECLRTL-SGHTSGVTSVSFS---PDG--KRLVSGS--EDGTIKVWD