Accession: ZK1307.6 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = ZK1307.6 (Len=702)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ZK1307.6, Len=702):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDEQQPPANSPAIFHSPQAMPVRRTLGPHNSPVKSMSTNSSAHTSPRVTPTKGANPYGDRFMPLRQSNIEWNARYHSINS 80  
WD40-rpts                                                                                      

Query       81 DDDSGFKKPMGTSSCNRHLGGGQNSAFMSDSSTHPSSSSLAGLGALATAPSSSQSSLSSHPHQHHNHHSSSSSSYHDYYQ 160 
WD40-rpts                                                                                      

Query      161 GTSSGSGNTSPTAQAACMDDTRSSEAVLRALLRNEMLKDRIDDVKTQVQTSEEVIATFSLGPVVSAFPQPTQESGTRGII 240 
WD40-rpts                                               (_________________WD 1________________)

Query      241 PQLERNAYGGSVDTVFPVVANEGIIDVTRISGAESPTMAQMMEPRLRCGADSVADIPLSPAASINGDTPTKAPPPALPLS 320 
WD40-rpts                                                                                      

Query      321 PIVQKQSPARSLFTYSAKTTPVKYGGQATTTATSPFGGPFGVDSQRLLRTPRKPIRKVPKNPYKVLDAPELQDDFYLNLV 400 
WD40-rpts                           (_________________WD 2________________)   (________________

Query      401 DWSSQNQLSVGLAACVYLWSATTSQVIKLCDLGQTNEQDQVTSVQWCDKGDLLAVGTSRGVTQIWDVTTQKKTRELTGHS 480 
WD40-rpts      WD 3_______________)(____________________WD 4____________________)   (__________

Query      481 SRVGCLAWNADTICSGSRDRTIMHRDIRCDDNDMGRKLTNHRQEVCGLKWSPDKQLLASGGNDNQLLVWNLRRNEPIQTY 560 
WD40-rpts      ______WD 5_______________)     (_________________WD 6________________)   (______

Query      561 TQHNAAVKALAWSPHHHGLLVSGGGTADRCLRFWNTLTAQPMQCVDTGSQVCNVAWSKHSSELVSTHGYSFNHVIIWKYP 640 
WD40-rpts      ____________WD 7__________________)   (_________________WD 8_________________)  

Query      641 SLQPVTKLVGHQYRVLYLAMSPDGESIVTGAGDETLRFWHVFNKGNPPTITRSKLNLHSTIR 702 
WD40-rpts       (_________________WD 9________________)

9 WD40-repeats found in QUERY=ZK1307.6 (Len=702):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   202-240      4.01  280.20  0.01038        5.0%     -0.86
  WD 2:  Seg  6   342-380      5.79  353.88  0.00106       15.0%      7.87
  WD 3:  Seg  8   384-420      3.00  238.50  0.03737       10.0%     34.97
  WD 4:  Seg 12   421-466      7.30  416.12  0.00015       27.5%     46.00
  WD 5:  Seg 16   470-506      7.02  404.76  0.00022       35.0%     49.93
  WD 6:  Seg 20   512-550      9.34  500.46  1.1e-05       32.5%     45.47
  WD 7:  Seg 23   554-595      7.38  419.49  0.00014       25.0%     39.77
  WD 8:  Seg 27   599-638      5.50  341.79  0.00154       22.5%     46.30
  WD 9:  Seg 31   642-680      9.46  505.47  9.6e-06       32.5%     53.91

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  202-240    -DD------VKTQVQTSEEVIATFSLGPVVSAFP---Q--PTQESGTRGII
   WD 2  342-380    -VK------YGGQATTTATSPFGGPFGVDSQRLL---R--TPRKPIRKVPK
   WD 3  384-420    -KV------LDAPELQDDFYLNLVDWSSQN--QL---S--VGLAACVYLWS
   WD 4  421-466    ATTSQVIKLCDLGQTNEQDQVTSVQWCDKGDLLA---V--GTSRGVTQIWD
   WD 5  470-506    -QK------KTRELTGHSSRVGCLAWNADT--IC---S--GSRDRTIMHRD
   WD 6  512-550    -ND------MGRKLTNHRQEVCGLKWSPDKQLLA---S--GGNDNQLLVWN
   WD 7  554-595    -NE------PIQTYTQHNAAVKALAWSPHHHGLLVSGG--GTADRCLRFWN
   WD 8  599-638    -AQ------PMQCVDTG-SQVCNVAWSKHSSELV---STHGYSFNHVIIWK
   WD 9  642-680    -LQ------PVTKLVGHQYRVLYLAMSPDGESIV---T--GAGDETLRFWH

   WD40 Template    TGE------CLRTLSGHTSGVTSVSFSPDGKRLV---S--GSEDGTIKVWD