Input parameters:

  Query = FBpp0070303 (Len=1525)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0070303, Len=1525):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVSTNLVVPVVLWGPTAPTHCISSVFLSDDQFTLVTGCYDGQICLWQVEPTTLKMSPRCLLVGHSAPVLCLVRASLLPEN 80  
WD40-rpts             (_________________WD 1_________________)       (__________________WD 2___

Query       81 NFLVSSSENGEMCTWDLTDGKCMEAVKLPQVHTQIQSYHTANSEDVRLFCIGYYAEIMVMDPFSLEVIYVLSSKVKPDWI 160 
WD40-rpts      _______________)   (___________________WD 3__________________)          (_______

Query      161 SAIHVLRPMRRKDDVVLAITTTGTVKVWTLTGNENKHAEPIYENESKEIRCLNAITMNCCAQNQRTVLLVCTKYWQIYDA 240 
WD40-rpts      _________WD 4_______________)           (_________________WD 5________________) 

Query      241 GDFTVLCSVIAPARERWQGGDFITSDRVMLWTDEGKGYLYKLPANCIPDNKEFHSKSVVRDAPYLYYVLQHAGDKVLSCP 320 
WD40-rpts                                                                            (_________

Query      321 PAMKLLQGAGGQHNLLRGDSEGYISVWNVPEVPLDNISILQAKQMPPRPLKPHVCTSLVEAWSIMDPPPVGILDQLSRIT 400 
WD40-rpts      _______WD 6________________)                                            (_______

Query      401 ESPVKLTSSIYLPQQSRLVIGREDGSIVIVPATQTVMMQLLVGIKQNFSDWPSHQILYGHRGRVNCLLCPSMIHSRYEKS 480 
WD40-rpts      __________WD 7________________)                   (____________________WD 8_____

Query      481 HLLSGGIDFAVCLWDLYSGSLLHRFCVHAGEITQLLVPPESCSPRILKCICSVASDHSVTLVSLQERKCVTLASRHLFPV 560 
WD40-rpts      ______________)   (____________________WD 9___________________)   (_____________

Query      561 VTIKWRPLDDFLIVGCSDGSVYVWQMETGHLDRVLHGMLAEEVLSACDEQAEDGGSGGGGGSNGASASEMGMANPAVHFF 640 
WD40-rpts      ____WD10________________)   (_________________WD11________________)             

Query      641 RGLKSRNMNAIRHATQRGITQLQQLQGHNQGNFDFLMKHRSNPLVIQGLRTNPKDAESHILFFDIEGLIFELHSEEYAQM 720 
WD40-rpts                        (____________________WD12____________________)  (_____________

Query      721 TPATLESLGVHLQNPKDGKSMHLDASKKIGDFFNKVKNKAVDVEKILKDKDKHGLVQKFKEKTEIVEKKVQAKVESLQKA 800 
WD40-rpts      ____WD13________________)    (_______________________WD14_______________________

Query      801 VEPHEEQQDLKSKIASKMEVTHVMEVAQLLLSLLHSWGLDPHLDKMCETRLGLLRPIVPISYGVLSKAGYMSLLLPTWQN 880 
WD40-rpts      )                                                                               

Query      881 NYAIPPGIQLPSSSKKRPLPEELQRLEHLTAVFTSRLHWELSTTLTTNHILALVAMSNTLLSMSAASFLPDSEKHKKLQR 960 
WD40-rpts                                                                                      

Query      961 LAQRTDSTLSNEEEREELMAHHISQIKHAWSLLATHHCFLLPDKIEALEPKKFKRPQVEMMVKRWQHHCIEIREAAQQIL 1040
WD40-rpts                                                                                      

Query     1041 LGELTRMGKKGRKQLVESWAQYLPLYTHTEPIVGAQQQLALISQPASGGAGSGSGGNGGVGVGVSGGGGAGSGSGPGGSV 1120
WD40-rpts                                                                                      

Query     1121 PGGDAHQDEDYEEEEEEIIRKPSSLSELKRKQTTAVILLGVIGAEFGQDISQESPNHRGSISMATGANLTSGVAGGERRK 1200
WD40-rpts                                                                                      

Query     1201 SSVVEGFGIANNLARLTSMALAHLLYAPPSPKLPQYTPLRRAAIDLLGRGFTVWEPYLDVSKVLLGLLEISCEGKAVPNL 1280
WD40-rpts                                                                                      

Query     1281 NYKLPLTPQADACRTARHALRLIATARPAAFITTMAREVARYNTMQQNAQSINTPLTQSVLHKAKGEILQCVEMLIDKMQ 1360
WD40-rpts                                                                                      

Query     1361 SEIAGLLVEVMDIALHCVDGNELKNRGLAELCPAICKFNQISHCAQTRRIAVGANSGNLAIYELRQNKCQMIPAHTHPIT 1440
WD40-rpts                              (_________________WD15________________)  (______________

Query     1441 SLAFSPDGKYLVSYSCAENRLSFWQTSTGMFGLGQSQTRCTKGYSTAPIPDVSRLNPMRLAKLVWINNRTVTLMLADGSE 1520
WD40-rpts      ___WD16_________________)  (_________________WD17________________)              

Query     1521 TRFNV 1525
WD40-rpts           

17 WD40-repeats found in QUERY=FBpp0070303 (Len=1525):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     8-47       6.41  379.34  0.00048       32.5%     50.43
  WD 2:  Seg  5    55-96       6.25  372.75  0.00059       35.0%     43.65
  WD 3:  Seg  8   100-142      3.88  274.79  0.01227       12.5%     45.35
  WD 4:  Seg 13   153-189      3.56  261.90  0.01825       15.0%     32.80
  WD 5:  Seg 17   201-239      3.92  276.75  0.01155        7.5%     36.81
  WD 6:  Seg 27   311-348      6.10  366.45  0.00072       15.0%     31.84
  WD 7:  Seg 31   393-431      7.57  427.54  0.00011       30.0%     45.21
  WD 8:  Seg 34   451-495      6.31  375.14  0.00055       25.0%     47.17
  WD 9:  Seg 38   499-543      6.13  367.82  0.00069       20.0%     55.43
  WD10:  Seg 42   547-585      8.58  469.24  2.9e-05       27.5%     53.11
  WD11:  Seg 46   589-627      6.77  394.23  0.00030       17.5%     37.36
  WD12:  Seg 51   659-704      4.64  306.14  0.00465       22.5%     32.32
  WD13:  Seg 55   707-745      5.80  354.42  0.00104       12.5%     36.89
  WD14:  Seg 58   750-801      3.17  245.75  0.02995       12.5%      8.59
  WD15:  Seg 64  1385-1423     5.97  361.09  0.00085       15.0%     45.14
  WD16:  Seg 68  1426-1465     8.01  445.62  6.1e-05       37.5%     52.35
  WD17:  Seg 71  1468-1506     4.29  291.78  0.00726       12.5%     15.44

Multiple sequence alignment of 17 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    8-47     VPVVLWGPTAP----THCISSV---FL------SDDQ------F-TLV-------TGC-YD-------------GQICLWQ
   WD 2   55-96     -MSPRCLLVGH----SAPVLCLVRASL------LPEN------N-FLV-------SSS-EN-------------GEMCTWD
   WD 3  100-142    -GKCMEAVKLPQVHTQIQSYHT---AN------SEDV------R-LFC-------IGY-YA-------------EIMVMDP
   WD 4  153-189    ----SKVKPDW----ISAIHVL---RP------MRRK------DDVVL-------AIT-TT-------------GTVKVWT
   WD 5  201-239    -IYENESKEIR----CLNAITM---NC------CAQN------Q-RTV-------LLV-CT-------------KYWQIYD
   WD 6  311-348    --HAGDKVLSC----PPAMKLL---QG------AGGQ------H-NLL-------RGD-SE-------------GYISVWN
   WD 7  393-431    -LDQLSRITES----PVKLTSS---IY------LPQQ------S-RLV-------IGR-ED-------------GSIVIVP
   WD 8  451-495    -WPSHQILYGH----RGRVNCL---LCPSMIHSRYEK------S-HLL-------SGG-ID-------------FAVCLWD
   WD 9  499-543    -GSLLHRFCVH----AGEITQL---LV------PPESCSPRILK-CIC-------SVA-SD-------------HSVTLVS
   WD10  547-585    -RKCVTLASRH----LFPVVTI---KW------RPLD------D-FLI-------VGC-SD-------------GSVYVWQ
   WD11  589-627    -GHLDRVLHGM----LAEEVLS---AC------DEQA------E-DGG-------SGG-GG-------------GSNGASA
   WD12  659-704    -ITQLQQLQGH----NQGNFDF---LM------KHRS------N-PLVIQGLRTNPKD-AE-------------SHILFFD
   WD13  707-745    -GLIFELHSEE----YAQMTPA---TL------ESLG------V-HLQ-------NPK-DG-------------KSMHLDA
   WD14  750-801    -GDFFNKVKNK----AVDVEKI---LK------DKDK------H-GLV-------QKF-KEKTEIVEKKVQAKVESLQKAV
   WD15 1385-1423   -NRGLAELCPA----ICKFNQI---SH------CAQT------R-RIA-------VGA-NS-------------GNLAIYE
   WD16 1426-1465   -QNKCQMIPAH----THPITSL---AF------SPDG------K-YLV-------SYSCAE-------------NRLSFWQ
   WD17 1468-1506   -TGMFGLGQSQ----TRCTKGY---ST------APIP------D-VSR-------LNP-MR-------------LAKLVWI

   WD40 Template    TGECLRTLSGH----TSGVTSV---SF------SPDG------K-RLV-------SGS-ED-------------GTIKVWD