WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: FBpp0070379 [Drosophila melanogaster] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = FBpp0070379 (Len=3433) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (FBpp0070379, Len=3433): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGSQTLEILRQGVWASLTGGYFYDPHQGVFCNVVHLYLWLYLLCSPFVAYLYFPSTWLTWCLYCVITSLTILMVKLANLA 80
WD40-rpts
Query 81 LHRLYDRAQTMSEGNLKGQFVKVTKETEPRHDDEGGIEMKVIRPGGSRISGEQAINEASEENSIMSIDNVNSIIDLKVDV 160
WD40-rpts
Query 161 HRKNSSESIELMFYAPSMLSGGSQQDQQSLAGSASVSKSIRSTGPGGNSSTSAAAQADMFNKYLTVYPEVVEAAGSSAGS 240
WD40-rpts
Query 241 ADGGSSGGDSRSGAAVSTLGHTGAGTAPAQHVRTGHLSRKCSEVFSRRHRRRLERQSSLDTAAAAANSNAENKLMRNQSD 320
WD40-rpts
Query 321 TIATAAPSFLHSQPTNKARGQTNPRQHFITSAPSTGIGGGDAPTSSTAVVVIAPASNSLVNPGRSSRLQRHRSSETHDER 400
WD40-rpts
Query 401 LKHQSRGGLFQPILQLPHHSAASSIGALAVLGGGGNVAANDVEDMELGLVRNAGSGGVADACSRALQSWILDPFPDGYLE 480
WD40-rpts
Query 481 DDSYTKSDLGIEQPHQPTFRTQHRHHHHHHHLHHHLGGAIIRKDPTSTMSALQLAAVTQPGTGGSVTGGGGAAGGGGSAA 560
WD40-rpts
Query 561 GMKRRRHSNATSYKHGSSQSNKSSLVGGGGSRGPSGEAGTSGGAGGTGGVRRIKSAALEVLCPQPSVSNLSPHPNSVEAI 640
WD40-rpts
Query 641 SGQQQMRNPLPPPSKSLVRNQHLNLYPTQGYGDGTPSAGGGGPGNSSTCSSLFFGSSSACGSTTALIEPPVYPIVEHSDE 720
WD40-rpts
Query 721 KTAHEEHGDDCLGIGQGNADDDDEVDDVPIRRRTRALGCSQTHYSVESDVGGFLADEVGADEDVFKDFDDNLEHILSELQ 800
WD40-rpts
Query 801 QTHNQLDDVLKTHDLHHHSHLHHHKAASVEGAGPSGGSVAVGVSAGNDDEDEETEDNNTGSRSPLLNDRNRQPATLREIQ 880
WD40-rpts (__________________WD 1_________________)
Query 881 ADKQLRQELSHQSGAVIPAPNPPVPIRSEADSGCPSSDCEQVSASSKDQLLSGIELELQQYQILQRCQLDEEQPCTSKMA 960
WD40-rpts
Query 961 AKSLGAIPKVVKYREVDELRRRRRGGSPADAAEAGNEFALVKQTKQASRNSSSSNSTHSISLTDSLTADIHKMLWLMHGG 1040
WD40-rpts (_________________________WD 2___
Query 1041 AVDDRGRPITGTSADGTPIPASSSLVPPNMSNAHFQFYQDAIQALQGTHPTSGSSVEHMTNIELARDKLRLDAKLMCEQL 1120
WD40-rpts _____________________)
Query 1121 VAAAEANSGVRGNTLATQQMTQQQVGMLMRGGSSSRHPSSAPFSVQGLINVIRSERPAARSQLDALQQLSDAAAALAANA 1200
WD40-rpts
Query 1201 SEAASVSASGAGGGASSGGGGVLSALGLANHPSNQISQISQLSQMSQPMLNVDGHFAPYCDYWRPACLLSATEKPAAPKS 1280
WD40-rpts
Query 1281 FYKYRFKWCGQEHEFKIAMDRLELLALFDRDLHWMHVLLASLLCTLVACLGAAILQHDHYKDLCALLFCAVIAGAQYSLV 1360
WD40-rpts
Query 1361 KSVQPDAASPVHGFNKTVAYSRAIYFCLAGGMLLLLKRLDTDYGERTPDPVVFFGMRYSPADVVALLLQALYILLLCFPI 1440
WD40-rpts
Query 1441 IFSVGLCPQINTFLMYLLEQIDMHVFGGNAASSLLGSFLCVVRSVLAVMLLYGPLYGALDEQRGTQYILFSIFCAMLVPL 1520
WD40-rpts
Query 1521 GYHLSRCASDFSHLWRLIKTCIVSTYRDDEDEDLSQMQHIATGTVTGSGTANSTALQLTTSTPKQHRQTDVKTEHEQIEL 1600
WD40-rpts
Query 1601 SSLEKLTVNEEHHEKDHGADDQLETDQDLPLQQKHSKSKTSSLGSSQQTLGKTISSSKRAITASSSCTSIGTGEPAVEAG 1680
WD40-rpts
Query 1681 ALTEEAVEGEEQRRNTLAGEVGSKHELAENYDQAAKIDECEDKISSSSATNPGDMSTLTAGAGTATTDATPACLEADPDA 1760
WD40-rpts
Query 1761 EAEAPADEKQHQGILGTGTGTGTGTTEASENGSGGGANGNTNSNGTGNDLPDPLPRKLQATVTTRLKNDLVVMTLLAVSV 1840
WD40-rpts
Query 1841 LGLHCSTVFTALQPDLNVVLYSFIGVLGLLLHYIVPQMRKHMPWLCFSRPLLRQREFGQFEVLNAPKIMWFEKLYIYLSV 1920
WD40-rpts
Query 1921 LERNVLFPLLAISSLTADSQLIVAKFGLPWGTLIVAICALKFVRNAYSDPTNQYLIIIFTVLLFRIDFAMATETFIIDYF 2000
WD40-rpts
Query 2001 FVSLAFRKCCDFLLKLQFIVTYIAPWQITWGSAFHAFAQPFSVPHSAMLFLQAAISAVLSTPLNPFLGSAIFLTSYVRPI 2080
WD40-rpts
Query 2081 KFWERDYNTRRIDHSNTRLSSQLERDLGADDNNLNSIFYEHLTRSLQHSLCGDLLMGRWGNVNQGDCFGNNIILYLSYKE 2160
WD40-rpts
Query 2161 AETLFILSVLASDDLNCLVHIIELGNGLCTFQMRGLEFRGTYCQQREVEAITEDVEDNDGCCCCDPGHLPQLLSANAMFS 2240
WD40-rpts
Query 2241 TRWLAWQVVAAQYVIEGYSISDNLASATLQVFEYRKVLITYYIKSIIYYVVKNPKLEQWLASGPIQDALQHTLSRQFVDL 2320
WD40-rpts
Query 2321 DPIFNFNLDEDFDFRAVGITRSSFCYVYLKWINYCVDMRRDANSMGGAPPAQAPAAAGGASSAPATAGVAPPAPVTPAHN 2400
WD40-rpts
Query 2401 DSKSTPNLSAHGGQAGPSSGQSKSQSQQQLRRPQKSVAQETSVGGGGVVVGGTTVPGTGGVTGGGGDPQLSSSHSFANIS 2480
WD40-rpts
Query 2481 RQTSESAPGLGGYVAYMDQNVFVKLAKSSTTTGAGAGAPTSRKESQEKPALRLKLASVGKDAPLVSLCLALGLLARRSLA 2560
WD40-rpts
Query 2561 TASHSALTGVEFFLHGLHALFKGDFRITSPRDEWVFADMELLHSVVAPAVKMALKLQQDHITNPDEFLDPHALYDAIDNC 2640
WD40-rpts
Query 2641 SNELVISHEADPVWRSAVLRGAPNLLALRHVMEDGSDEYRIIRLTKRCLSFRVIKLNRECVRGLWAGQQQELIYLRNRNP 2720
WD40-rpts
Query 2721 ERGSIQNAKQALRNIINSSCDQPIGYPIYVSPLTTSYADTNAQLCEVIGGAITLDTIRHTVLGWWHRIRERCRQGCSSGS 2800
WD40-rpts
Query 2801 ALEPHPGSGPVQLGACNFGSGGSVVGAASTATGVGASTGSGLGVAAPGTAGSTGGESGDLAPVFISAPLYNTLTVNSYYS 2880
WD40-rpts
Query 2881 VRPGNVPGGPIPGNLGGNYVSDSLAVVRGGLAVMPVKPTSTTLIAGLLNRERDETSGSGIMGAGASGPTRATSSGGVRSR 2960
WD40-rpts
Query 2961 RPEVGSSRGRDHERRATLPIASGGAGGEPGKDLTAPQTQVEHEPSPRSTKLSSSSGSLGLGMGVGLGNIITTPGDYPRKT 3040
WD40-rpts
Query 3041 KGPICLTAVDTGTSSSAAEGKPAGSGTVAGTGVGGVIRKPRIEIFKKVIIVDDTGIYDCLDIIDAVVWPTERMRNNGGRL 3120
WD40-rpts
Query 3121 SWKDWEPSAGMVGHVVHCWTPNHKDIRFRSHVNRYVYLVEIGDHYVPVEELGLREYNQIMGSTEEMANSRRSSIQRDFHE 3200
WD40-rpts
Query 3201 YNIQLKLAGLAPIIGGGESSTATTSDASKSHKAKIRAVSSSSSEDEDTSSTRSIPLPQGDDGDLTNFTRLVSMWKEIILD 3280
WD40-rpts
Query 3281 NNKRRLYDMGELSPELLQKLDDAVQQQQQLEDALAEESKEKGTATVTANEGEEGVGEMEIEPEQEQKEVVYLEEQSPLEE 3360
WD40-rpts
Query 3361 VTVSKPDEQPAQPTIPASPVPAETSSTSSAKSTSSPSLCQEEEDAVDPEETPELASEESPSDENGESEAGTTV 3433
WD40-rpts
 2 WD40-repeats found in QUERY=FBpp0070379 (Len=3433): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 7 812-852 2.99 238.20 0.03771 20.0% 9.50 WD 2: Seg 10 1008-1062 4.10 284.16 0.00919 20.0% -13.69Multiple sequence alignment of 2 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 812-852 THDLHHHSHLHHHKAAS---------------VEGAGPSGGSVAVGVSAGNDDEDE WD 2 1008-1062 SRNSSSSNSTHSISLTDSLTADIHKMLWLMHGGAVD-DRGRPITGTSADGTPIPAS WD40 Template TGECLRTLSGHTSGVTS---------------VSFS-PDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |