Input parameters:

  Query = FBpp0070382 (Len=535)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0070382, Len=535):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQNSFLPLNTRRFRQRAQVETPDTVYWDRLAKPELLKEHNTIDYLDFSPSDPDNFVVTCSVRVQIYNLVTMLVVKNLSRF 80  
WD40-rpts                                       (______________WD 1______________)   (_________

Query       81 QKTAYGATFRQDGRLLAAGDEEGHVKLFDTTSRNILRLFKGHTAPVHRTFFTADKLQLASFGDDKSVRLWDVANEKVVQT 160 
WD40-rpts      ________WD 2________________)   (_________________WD 3________________)   (_____

Query      161 YEDTHTDYVRAGAMHPQAGHMFVSGGYDGKIKLYDTRAETAVQRTLDHGAPVESMLFLPNGSIFVSAGGSQVRVWDLISG 240 
WD40-rpts      _____________WD 4_________________)   (________________WD 5________________)    

Query      241 CRLLTMMSQHHKTVTCLRLGSDGRRLLSGGLDRHVKIYDVSTYKTVHTLTYPNAVVSMAVADGDQAVVAGMVDGLVSIRR 320 
WD40-rpts      (_________________WD 6________________)(__________________WD 7_________________)

Query      321 MMVDSKPSHLKKIRADRARKYFVSTKRTNNTQEVDHTIKDHVKGPGLKSYDVHLRQFNHKKALDDVMNAQKMQYQPELIV 400 
WD40-rpts         (_________________WD 8________________)(_____________________________________

Query      401 AVITDLLHRGSLGKALTGRHEAALVRFIDFICNHLGEVRFMRPLMMAASTVLDVFEQRLVAYSQKLMKALQRLSLAMQEE 480 
WD40-rpts      ______________________________WD 9______________________________________________

Query      481 VRLTAELMRMKGAVDMLIGISMDNSEVAHKPTYVETKTPKMHPSVAAQNYVVLVE 535 
WD40-rpts      ____________________)                                  

9 WD40-repeats found in QUERY=FBpp0070382 (Len=535):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    34-67       5.67  348.85  0.00124       10.0%     49.03
  WD 2:  Seg  5    71-109      8.51  466.00  3.3e-05       27.5%     57.50
  WD 3:  Seg  9   113-151      9.55  509.10  8.5e-06       32.5%     54.36
  WD 4:  Seg 13   155-195      6.79  395.11  0.00029       35.0%     56.94
  WD 5:  Seg 17   199-236      7.65  430.71  9.7e-05       27.5%     45.27
  WD 6:  Seg 20   241-279      9.17  493.48  1.4e-05       35.0%     55.48
  WD 7:  Seg 24   280-320      6.80  395.65  0.00029       15.0%     54.39
  WD 8:  Seg 28   324-362      6.10  366.46  0.00072       15.0%     33.12
  WD 9:  Seg 31   363-501      3.87  274.52  0.01237       12.5%     20.33

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   34-67     ------E------LL-K-EHNTIDYLDFSPS-DPDNFVVTC-------------------S---------------VRVQI--------------YN---------------------------------------------
   WD 2   71-109    -MLVVKN------LS-R-FQKTAYGATFRQD-GRLLAAGDE-------------------E---------------GHVKL--------------FD---------------------------------------------
   WD 3  113-151    -RNILRL------FK-G-HTAPVHRTFFTAD-KLQLASFGD-------------------D---------------KSVRL--------------WD---------------------------------------------
   WD 4  155-195    -EKVVQT------YE-DTHTDYVRAGAMHPQAGHMFVSGGY-------------------D---------------GKIKL--------------YD---------------------------------------------
   WD 5  199-236    -ETAVQR------TL-D-HGAPVESMLFLPN-GSIFVSAG--------------------G---------------SQVRV--------------WD---------------------------------------------
   WD 6  241-279    -CRLLTM------MS-Q-HHKTVTCLRLGSD-GRRLLSGGL-------------------D---------------RHVKI--------------YD---------------------------------------------
   WD 7  280-320    VSTYKTV------HTLT-YPNAVVSMAVADG-DQAVVAGMV-------------------D---------------GLVSI--------------RR---------------------------------------------
   WD 8  324-362    -DSKPSH------LK-K-IRADRARKYFVST-KRTNNTQEV-------------------D---------------HTIKD--------------HV---------------------------------------------
   WD 9  363-501    KGPGLKSYDVHLRQF-N-HKKALDDVMNAQK-MQYQPELIVAVITDLLHRGSLGKALTGRHEAALVRFIDFICNHLGEVRFMRPLMMAASTVLDVFEQRLVAYSQKLMKALQRLSLAMQEEVRLTAELMRMKGAVDMLIGIS

   WD40 Template    TGECLRT------LS-G-HTSGVTSVSFSPD-GKRLVSGSE-------------------D---------------GTIKV--------------WD---------------------------------------------