Input parameters:

  Query = FBpp0070654 (Len=478)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0070654, Len=478):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFSPEYEKRILKHYSPVARNLFNNFESSTTPTSLDRFIPCRAYNNWQTNFASINKSNDNSPQTSKKQRDCGETARDSLAY 80  
WD40-rpts                                                                                      

Query       81 SCLLKNELLGSAIDDVKTAGEERNENAYTPAAKRSLFKYQSPTKQDYNGECPYSLSPVSAKSQKLLRSPRKATRKISRIP 160 
WD40-rpts                                                                                      

Query      161 FKVLDAPELQDDFYLNLVDWSSQNVLAVGLGSCVYLWSACTSQVTRLCDLSPDANTVTSVSWNERGNTVAVGTHHGYVTV 240 
WD40-rpts                                            (___________________WD 1__________________

Query      241 WDVAANKQINKLNGHSARVGALAWNSDILSSGSRDRWIIQRDTRTPQLQSERRLAGHRQEVCGLKWSPDNQYLASGGNDN 320 
WD40-rpts      _)   (________________WD 2_______________)(___________________WD 3______________

Query      321 RLYVWNQHSVNPVQSYTEHMAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAWSKHSSELV 400 
WD40-rpts      _____)   (__________________WD 4__________________)   (_________________WD 5____

Query      401 STHGYSQNQILVWKYPSLTQVAKLTGHSYRVLYLALSPDGEAIVTGAGDETLRFWNVFSKARSQKENKSVLNLFANIR 478 
WD40-rpts      _____________)   (_________________WD 6________________)                      

6 WD40-repeats found in QUERY=FBpp0070654 (Len=478):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   199-242      8.11  449.81  5.4e-05       35.0%     55.09
  WD 2:  Seg  9   246-282      6.81  396.17  0.00028       30.0%     51.82
  WD 3:  Seg 13   283-326      9.35  501.05  1.1e-05       37.5%     50.31
  WD 4:  Seg 17   330-371      7.12  408.59  0.00019       22.5%     41.64
  WD 5:  Seg 21   375-414      5.37  336.54  0.00181       27.5%     48.12
  WD 6:  Seg 25   418-456      9.39  502.37  1.1e-05       32.5%     53.96

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  199-242    AC----TSQVTRLCDLSPDANTVTSVSWNERGNTVAV---GTHHGYVTVWD
   WD 2  246-282    -N----KQ----INKLNGHSARVGALAWNSD--ILSS---GSRDRWIIQRD
   WD 3  283-326    TRTPQLQS----ERRLAGHRQEVCGLKWSPDNQYLAS---GGNDNRLYVWN
   WD 4  330-371    -V----NP----VQSYTEHMAAVKAIAWSPHHHGLLASGGGTADRCIRFWN
   WD 5  375-414    -G----QP----MQCVDTG-SQVCNLAWSKHSSELVS-THGYSQNQILVWK
   WD 6  418-456    -L----TQ----VAKLTGHSYRVLYLALSPDGEAIVT---GAGDETLRFWN

   WD40 Template    TG----EC----LRTLSGHTSGVTSVSFSPDGKRLVS---GSEDGTIKVWD