Input parameters:
Query = FBpp0070655 (Len=478)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (FBpp0070655, Len=478):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MFSPEYEKRILKHYSPVARNLFNNFESSTTPTSLDRFIPCRAYNNWQTNFASINKSNDNSPQTSKKQRDCGETARDSLAY 80
WD40-rpts
Query 81 SCLLKNELLGSAIDDVKTAGEERNENAYTPAAKRSLFKYQSPTKQDYNGECPYSLSPVSAKSQKLLRSPRKATRKISRIP 160
WD40-rpts
Query 161 FKVLDAPELQDDFYLNLVDWSSQNVLAVGLGSCVYLWSACTSQVTRLCDLSPDANTVTSVSWNERGNTVAVGTHHGYVTV 240
WD40-rpts (___________________WD 1__________________
Query 241 WDVAANKQINKLNGHSARVGALAWNSDILSSGSRDRWIIQRDTRTPQLQSERRLAGHRQEVCGLKWSPDNQYLASGGNDN 320
WD40-rpts _) (________________WD 2_______________)(___________________WD 3______________
Query 321 RLYVWNQHSVNPVQSYTEHMAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAWSKHSSELV 400
WD40-rpts _____) (__________________WD 4__________________) (_________________WD 5____
Query 401 STHGYSQNQILVWKYPSLTQVAKLTGHSYRVLYLALSPDGEAIVTGAGDETLRFWNVFSKARSQKENKSVLNLFANIR 478
WD40-rpts _____________) (_________________WD 6________________)
6 WD40-repeats found in QUERY=FBpp0070655 (Len=478):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 5 199-242 8.11 449.81 5.4e-05 35.0% 55.09
WD 2: Seg 9 246-282 6.81 396.17 0.00028 30.0% 51.82
WD 3: Seg 13 283-326 9.35 501.05 1.1e-05 37.5% 50.31
WD 4: Seg 17 330-371 7.12 408.59 0.00019 22.5% 41.64
WD 5: Seg 21 375-414 5.37 336.54 0.00181 27.5% 48.12
WD 6: Seg 25 418-456 9.39 502.37 1.1e-05 32.5% 53.96
Multiple sequence alignment of 6 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 199-242 AC----TSQVTRLCDLSPDANTVTSVSWNERGNTVAV---GTHHGYVTVWD
WD 2 246-282 -N----KQ----INKLNGHSARVGALAWNSD--ILSS---GSRDRWIIQRD
WD 3 283-326 TRTPQLQS----ERRLAGHRQEVCGLKWSPDNQYLAS---GGNDNRLYVWN
WD 4 330-371 -V----NP----VQSYTEHMAAVKAIAWSPHHHGLLASGGGTADRCIRFWN
WD 5 375-414 -G----QP----MQCVDTG-SQVCNLAWSKHSSELVS-THGYSQNQILVWK
WD 6 418-456 -L----TQ----VAKLTGHSYRVLYLALSPDGEAIVT---GAGDETLRFWN
WD40 Template TG----EC----LRTLSGHTSGVTSVSFSPDGKRLVS---GSEDGTIKVWD