Input parameters:

  Query = FBpp0070850 (Len=1624)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0070850, Len=1624):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTSAVRAKSAAAAVGVAVDESSGSSNGSVADQEVASSKEAVLSVLIRKRYEKYVFAPWDDPIILIMEQLEHIEHCRSAAL 80  
WD40-rpts                                                                                      

Query       81 GNQVAIGRDPSQDDSLNDLGKVISNMRQDQSLVPIVKHIEQISDIQASNGQELASLGSLRELIRTIRKEWPRDDSIKLRL 160 
WD40-rpts                                                                                      

Query      161 KEIQILGMPPARSLCFGERIRDDRCPLSLQTKRHKERIQAMMYERQPWRIRERMKTASVALVLCLNIGVDPPDVVKIQPC 240 
WD40-rpts                                                                                      

Query      241 SRLECWIDPSSVSPPKAMELIGSNLQMQYERWQPRARYKKCNDPTVDDVKKLCTSLRRNAKGERILFHYNGHGVPKPTAN 320 
WD40-rpts                                                                                      

Query      321 GEIWVFNKTFTQYIPLSIFELITWMSAPSIYVYDCSNAGIIINSFQPYAKQHEEELGKALAAAQQRGGVQQLVGGSGGAA 400 
WD40-rpts                                                                                      

Query      401 NVAANQVQLTNQMVSYKNCIHLAACAANEILPMNAQLPADLFTSCLTTPINIALKWYAMQEKLGMVPRIQSELIDKIPGK 480 
WD40-rpts                                                                                      

Query      481 VNDRRTMMGELNWIFTAITDTIAWNTLPRELFQRLFRQDLLVASLFRNFLLAERILRSHDCTPVSLPALPPCYRHPMWKA 560 
WD40-rpts                                                                                      

Query      561 WDLVVDLALQQLPEILDHNAPYRQLPFFEHQLTAFQVWLDSESESRTPPEQLPIVLQVLLSQVHRLRALELLARFLDLGP 640 
WD40-rpts                                                                                      

Query      641 WAVNLALGVGIFPYVLKLLQSSTRELRPVLVFIWAKILAVDPSCQVDLVKEYKYFLSVLQDTSVSKEHRTLSAFVLSSIV 720 
WD40-rpts                                                                                      

Query      721 HNFLLGQTSALQGPLLSICLEQLNDGSWLLRQWLAICLGMLWQNFEKARWSGARDLAHEKLYVLLRDSIPEVRAAAVFAL 800 
WD40-rpts                                                                                      

Query      801 GTFISSVTDRSEEQANNIDRIIAITMLETVGEDMSPLVRMELAAALQWMVVLFESQFVAVYLTEHMRGHVSAASFVMCPD 880 
WD40-rpts                                                                                      

Query      881 PRDLTSSTHSLERHVTIRRGASSSSISNMGGASISSGTGSSSNPLGRSKSGSGSSGGRGAAGAAGGTNSIPFQSIFTKLW 960 
WD40-rpts                                                                                      

Query      961 LGICNLAQDPFPRVAAIAQEIVEHVRDTALCPIMAAKEATMANASEKCSSLSVSLPPSPNTRVNYLGGGGAPGGAGATAE 1040
WD40-rpts                                                                                      

Query     1041 SPPVGAAASGASHWAQKLRLSGSGACMGAGDPQTILQRKLRTSSINDETDSGPGYSRGVAGAGTGLGLPSGPRESTHSAR 1120
WD40-rpts                                                                                      

Query     1121 SSGSESNHYLEPGHSLTPIVLTEFIPWAISYFTRPGKERYSSAEGSAEEGRQRFPVDRNSAELRRRRLRFLRNDFVRRHA 1200
WD40-rpts                                                                                     (

Query     1201 GRKHQELIDPYGFDVCVWNRKTQFTPSIVKLLPYEPQIAVAYREKVLVYDFQYNSVRTYGAESLGGNFTGYSSGYGSGSG 1280
WD40-rpts      _______________________WD 1______________________)                              

Query     1281 SSSSLNGSTPRKSGAHTSGGGGGGFSAAPFARVSSIEFINAQDMALNLVAHEDGVVRVWQSSPPASSATSEDTPSKARLV 1360
WD40-rpts                         (__________________WD 2_________________)   (________________

Query     1361 TAWTALGQVNQHNHRQRSVASGGSIGKGADASGLSSAAIGSGGIVTAWQQCSQHLVIGGGGCRFIRIWDVERELKLADIP 1440
WD40-rpts      _WD 3_________________)       (_________________WD 4________________)   (_______

Query     1441 LGRSETCARVLSPYLPNMRSDVILAGCDDGSVRLFDKRCAPQDAGISVYRRHSAPILHASLRANGLVLVSGCTEGRISVA 1520
WD40-rpts      ____________WD 5___________________)      (_________________WD 6________________

Query     1521 DMRGSQSSINPFDVVYEWDAGGDVTAITSHQLEDTVACGNASKIVIYSLDGRQQKVLRTNEGFIGPKIGHPTYLYFHPYK 1600
WD40-rpts      )         (________________WD 7________________)  (____________________WD 8_____

Query     1601 AQLAVGFVDNTVAIYSPTPGREQS 1624
WD40-rpts      _______________)        

8 WD40-repeats found in QUERY=FBpp0070850 (Len=1624):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10  1200-1250     2.89  234.20  0.04259       15.0%     42.69
  WD 2:  Seg 16  1300-1340     6.82  396.28  0.00028       25.0%     41.09
  WD 3:  Seg 19  1344-1383     4.04  281.61  0.00994       10.0%     17.00
  WD 4:  Seg 20  1391-1429     3.93  277.14  0.01141       15.0%     41.33
  WD 5:  Seg 23  1433-1476     5.40  337.68  0.00175       17.5%     52.94
  WD 6:  Seg 27  1483-1521     7.85  438.93  7.6e-05       27.5%     50.31
  WD 7:  Seg 31  1531-1568     3.87  274.72  0.01229       10.0%     51.28
  WD 8:  Seg 35  1571-1616     6.12  367.55  0.00069       22.5%     52.78

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1200-1250   AGRKHQELIDPYGFDVCVWNRKTQF-------TPSIV-KL--L-----PYEPQIAVAYRE-KVLVYD
   WD 2 1300-1340   -GGGGGFSAA------------PFA-------RVSSI-EFINA-----QDMALNLVAHEDGVVRVWQ
   WD 3 1344-1383   -PASSATSED------------TPS-------KARLVTAW--T-----ALGQVNQHNHRQRSVASGG
   WD 4 1391-1429   -ASGLSSAAI------------GSG-------GIVTA-WQ--Q-----CSQHLVIGGGGCRFIRIWD
   WD 5 1433-1476   -ELKLADIPL------------GRS-------ETCAR-VL--SPYLPNMRSDVILAGCDDGSVRLFD
   WD 6 1483-1521   -DAGISVYRR------------HSA-------PILHA-SL--R-----ANGLVLVSGCTEGRISVAD
   WD 7 1531-1568   -PFDVVYEWD------------AGG-------DVTAI-TS--H-----QLEDTVACGN-ASKIVIYS
   WD 8 1571-1616   -GRQQKVLRT------------NEGFIGPKIGHPTYL-YF--H-----PYKAQLAVGFVDNTVAIYS

   WD40 Template    TGECLRTLSG------------HTS-------GVTSV-SF--S-----PDGKRLVSGSEDGTIKVWD