Accession: FBpp0070862 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = FBpp0070862 (Len=424)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0070862, Len=424):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MCTTISFAEPEIVLGHGRRVLFVNPDDLQIFKEIELPPDLGLKGHTSQSQESCTAAAAASTATAASGQAPGGKEQQLANQ 80  
WD40-rpts                                      (_____________________WD 1____________________) 

Query       81 PEEGGTSASASGLGCATSTSVQNVAYSPDGQLLAVTTSGKQKALLLYRSRPENARLLSARPLARASSALRFCSDSSSILV 160 
WD40-rpts             (__________________WD 2_________________)    (_________________WD 3______

Query      161 TDKTGDCYQYDCVEVEAPPRLLLGHLSVVYDILWSEDQQHIITCDRDDKIRVTNYPATFDIHSYCLGHREFVSGLALLTE 240 
WD40-rpts      __________)    (_________________WD 4________________)    (________________WD 5_

Query      241 QHIASASGDKTLRVWNYIQGKELLQHELPAPAVRLLVRQLEPEKVFQAAVLFYEHVDALGLYRLERSSDDTWSVTATQLV 320 
WD40-rpts      _______________)                                                          (_____

Query      321 CAEAGSWSISNFTLTSDRIYITGAENERLSLRVYDIATGQPASSGVPEGWLKMVLDGLGANEEGAPPFIPEDLSVWFKKR 400 
WD40-rpts      _____________WD 6_________________)   (___________________WD 7__________________

Query      401 FDNVSDYLERKKRRIEEQQQQKCG 424 
WD40-rpts      _)

7 WD40-repeats found in QUERY=FBpp0070862 (Len=424):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    33-79       5.19  329.18  0.00228       10.0%     31.14
  WD 2:  Seg  9    88-128      6.99  403.54  0.00023       17.5%     33.90
  WD 3:  Seg 12   133-171      7.84  438.37  7.7e-05       12.5%     56.72
  WD 4:  Seg 15   176-214      8.51  466.30  3.2e-05       27.5%     44.38
  WD 5:  Seg 19   219-256      7.33  417.45  0.00015       22.5%     50.01
  WD 6:  Seg 28   315-355      8.30  457.67  4.2e-05       12.5%     54.76
  WD 7:  Seg 31   359-402      4.57  303.28  0.00508        5.0%     15.77

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   33-79     EIELPPDLGLKGHTSQSQESCTAAAAASTATAASG--QAPGGK-EQ--QL---AN
   WD 2   88-128    -ASAS-------GLGCATSTSVQNVAYSPDGQLLAVTTSGKQK-AL--LL---YR
   WD 3  133-171    -NARL-------LSARPLARASSALRFCSDSSSIL--VTDKTG-DC--YQ---YD
   WD 4  176-214    -EAPP-------RLLLGHLSVVYDILWSEDQQHII--TCDRDD-KI--RV---TN
   WD 5  219-256    -FDIH-------SYCLGHREFVSGLALLTEQ-HIA--SASGDK-TL--RV---WN
   WD 6  315-355    TATQL-------VCAEAGSWSISNFTLTSDRIYIT--GAENERLSL--RV---YD
   WD 7  359-402    -GQPA-------SSGVPEGWLKMVLDGLGANEEGA--PPFIPE-DLSVWFKKRFD

   WD40 Template    TGECL-------RTLSGHTSGVTSVSFSPDGKRLV--SGSEDG-TI--KV---WD