WDRR: WD40 Repeat Recognition
| [HOME] [JOB LIST] [PRE-CALCULATED RESULTS] [VISITORS] [ABOUT] |
| Pre-calculated Results - Accession: FBpp0070926 [Drosophila melanogaster] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = FBpp0070926 (Len=1074) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (FBpp0070926, Len=1074): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAWRFKASKYKNAAPIVPKAEACVREICVGSYQTYGNNIAASGAFMAFNWEHTGSSVAVLPLDDCGRKSKTMPLLHGHTD 80
WD40-rpts (____________________WD 1___________________)________________
Query 81 TVTDLKFSPFHDGLLATASQDCLVKIWHIPEKGLEQSLSDPEAIFSHKQRRVETVGFHPTADGLMYSTAAGCVALFDLST 160
WD40-rpts ___WD 2____________________) (_________________WD 3________________)
Query 161 QKEIFSNNEHPEVIQSASWREDGSVLATSCKDKNVRIFDPRAAGSPIQLTAESHQSIKDSRVVWLGNQHRILTTGFDAAR 240
WD40-rpts (_________________WD 4________________)
Query 241 LRQVIIRDVRNFNTPEKTLELDCSTGILMPLFDPDTNMLFLAGKGDTTINYLEITDKDPYLIEGLRHTGEQTKGACLVPK 320
WD40-rpts (____________________WD 5___________________) (__________________WD 6__
Query 321 RALKVMEAEVNRVLQLTSNMVIPIMYQVPRKTYRDFHADLYPETTGYKTELVAGEWLNGSNQAVPKMSLDPAKREHGDEP 400
WD40-rpts ________________) (___________
Query 401 IIPRLGPKPFSSTTGDVSFDKVFAVPLAPGSHENISNVGQDSGVEMTPAQGAKPDLIVEIEIKKKHEREPAVSGNGVQKS 480
WD40-rpts ______WD 7________________)
Query 481 LTTSERRKIFEQNSESSENSTEGEDRTDADLRRNCTSRSSFAERRRIYENRSKSQVDEKPQSPVPLRREHSKVEPLKPNQ 560
WD40-rpts (_________________WD 8_
Query 561 QQQQQGNVIDTKRISVPEGKLMEEHRRGNGAGLKKSATEAAFSAASTKRTSTVFGKVSKFRHLKGTPGHKSTHIENLRNL 640
WD40-rpts _______________)_____________________WD 9____________________) (______
Query 641 SRQIPGECNGFHANQERVAVPLSGPGGKIAIFELSRPGRLPDGVIPSLVNGSNIMDFQWDPFDAQRLAVACDDGIVKIWH 720
WD40-rpts ________________WD10_____________________)________________WD11_________________)
Query 721 IEAGGLSEPTNTPAGELTAHLDKIYFIRFHPLAADVLLTASYDMTIKLWDLRTMTEKCSLSGHTDQIFDFAWSPCGRLGA 800
WD40-rpts (_________________WD12_________________) (_________________WD13_____
Query 801 TVCKDGKIRVYNPRKSETPIREGNGPVGTRGARITWALEGHYIVCTGFDKVSERQISVYNAQKLSAPLNTASLDVSPSIL 880
WD40-rpts ___________)(___________________WD14___________________) (____________________
Query 881 IPFYDEDSSTLFVTGKGDSTIYCYEITDEEPYICPLSHHRCTSLHQGLSFLTKNHCDVASVEFSKAYRLTNTTIEPLSFT 960
WD40-rpts WD15____________________) (____________________WD16___________________)
Query 961 VPRIKSELFQDDLFPPTRITWSATLSSEDWFASNDKAAPKVSLKPEGMETLSSIQQVPAQPVKKPDHPQFGGQKSEYEIN 1040
WD40-rpts
Query 1041 KQQEIQKSVSARMEFTTKLEQDDMEGVDENEWQE 1074
WD40-rpts
 16 WD40-repeats found in QUERY=FBpp0070926 (Len=1074): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 20-64 2.99 238.29 0.03761 15.0% 18.92 WD 2: Seg 4 62-108 7.68 432.02 9.4e-05 37.5% 49.59 WD 3: Seg 8 119-157 6.92 400.55 0.00025 20.0% 45.12 WD 4: Seg 11 161-199 8.26 455.72 4.5e-05 20.0% 52.52 WD 5: Seg 19 249-293 5.03 322.42 0.00281 22.5% 52.68 WD 6: Seg 23 296-337 5.26 331.87 0.00210 10.0% 39.57 WD 7: Seg 28 389-427 5.57 344.81 0.00140 12.5% -4.13 WD 8: Seg 32 538-576 4.15 286.08 0.00866 7.5% 11.27 WD 9: Seg 34 576-622 6.37 377.91 0.00050 17.5% 33.79 WD10: Seg 37 634-682 3.46 257.66 0.02079 10.0% 36.59 WD11: Seg 40 681-720 6.83 396.95 0.00028 22.5% 44.31 WD12: Seg 43 731-770 6.91 400.30 0.00025 30.0% 51.33 WD13: Seg 47 774-812 8.70 473.91 2.5e-05 30.0% 52.80 WD14: Seg 51 813-856 3.37 253.95 0.02330 12.5% 51.54 WD15: Seg 55 860-905 5.06 323.65 0.00270 20.0% 49.60 WD16: Seg 59 907-951 3.09 242.14 0.03344 25.0% 45.88Multiple sequence alignment of 16 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 20-64 AEA-------C------V-----R---------EICVG--SYQ-TYGNNIAA-SGAFM-AFNWEHTGSSVAVLPLDD WD 2 62-108 LDD-------CGRKSKTM-----P---------LLHGH--TDT-VTDLKFSPFHDGLL-A-----TASQDCLVKIWH WD 3 119-157 -SD-------P------E-----A---------IFSHK--QRR-VETVGFHP-TADGL-M-----YSTAAGCVALFD WD 4 161-199 -QK-------E------I-----F---------SNNEH--PEV-IQSASWRE-DGSVL-A-----TSCKDKNVRIFD WD 5 249-293 VRN-------F--NTPEK-----T---------LELDC--STG-ILMPLFDP-DTNML-F----LAGKGDTTINYLE WD 6 296-337 DKD-----PYL------I-----E---------GLRHT--GEQ-TKGACLVP-KRALK-V-----MEAEVNRVLQLT WD 7 389-427 -LD-------P------A-----K---------REHGD--EPI-IPRLGPKP-FSSTT-G-----DVSFDKVFAVPL WD 8 538-576 -EK-------P------Q-----S---------PVPLR--REH-SKVEPLKP-NQQQQ-Q-----QGNVIDTKRISV WD 9 576-622 VPEGKLMEEHR------R-----G---------NGAGL--KKS-ATEAAFSA-ASTKR-T-----STVFGKVSKFRH WD10 634-682 IEN-------L------R-----NLSRQIPGECNGFHA--NQE-RVAVPLSG-PGGKI-A-----IFELSRPGRLPD WD11 681-720 -PD-------G------V-----I---------PSLVN--GSN-IMDFQWDPFDAQRL-A-----VACDDGIVKIWH WD12 731-770 -NT-------P------A-----G---------ELTAH--LDK-IYFIRFHPLAADVL-L-----TASYDMTIKLWD WD13 774-812 -MT-------E------K-----C---------SLSGH--TDQ-IFDFAWSP-CGRLG-A-----TVCKDGKIRVYN WD14 813-856 PRK----SETP------I-----R---------EGNGP--VGTRGARITWAL-EGHYI-V-----CTGFDKVSERQI WD15 860-905 NAQ-------K------LSAPLNT---------ASLDV--SPS-ILIPFYDE-DSSTLFV-----TGKGDSTIYCYE WD16 907-951 TDE-----EPY------I-----C---------PLSHHRCTSL-HQGLSFLTKNHCDV-A-----SVEFSKAYRLTN WD40 Template TGE-------C------L-----R---------TLSGH--TSG-VTSVSFSP-DGKRL-V-----SGSEDGTIKVWD |
|
Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |