Input parameters:

  Query = FBpp0071028 (Len=1047)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0071028, Len=1047):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRLLKPAWVHHDDKQIFSVDIHKDCTKFATGGQGSDCGRVVIWNLLPVLSDKAEFDADVPKMLCQMDQHLACVNCVRWSQ 80  
WD40-rpts      (___________________WD 1___________________)               (_________________WD 

Query       81 NGQNLASGSDDKLIMIWRKSAGSSGVFGTGGMQKNHESWKCFYTLRGHDGDVLDLAWSPNDVYLASCSIDNTVIIWDAQA 160 
WD40-rpts      2________________)(___________________________WD 3__________________________)   

Query      161 FPHSVATLKGHTGLVKGVSWDPLGRFLASQSDDRSIKIWNTMNWSLSHTITEPFEECGGTTHILRLSWSPDGQYLVSAHA 240 
WD40-rpts       (_________________WD 4________________)           (__________________WD 5______

Query      241 MNGGGPTAQIIEREGWKCDKDFVGHRKAVTCVRFHNSILSRQENDGSPSKPLQYCCLAVGSRDRSLSVWMTALQRPMVVI 320 
WD40-rpts      ___________)   (_________________________WD 6________________________)(_________

Query      321 HELFNASILDLTWGPQECLLMACSVDGSIACLKFTEEELGKAISEEEQNAIIRKMYGKNYVNGLGKSAPVLEHPQRLLLP 400 
WD40-rpts      __________WD 7__________________)(_________________WD 8_________________)       

Query      401 QGDKPTKFPLSNNNEANQRPISKQTETRTKDGKRRITPMFIPLHEDGPTSLSMNIVSSSGSSTTALTSCSAAIGTLPAAA 480 
WD40-rpts                                                                               (______

Query      481 PTESAATPLMPLEPLVSKIDLGRLDSRLKTQPASQRRQSLPFDPGQSNELLRTPRLEEHQSSTCSPSNLNVTATGKSEFV 560 
WD40-rpts      ___________WD 9________________)                                                

Query      561 KAALDYRLHVSNGHLKTQHGMLAKVTASDSKEMLWEFYVGSPLVNLNLCEKYAMLCSLDGSMRLISMETGCPVFPAISLT 640 
WD40-rpts        (______________WD10______________)                                 (__________

Query      641 SSAVHCAFSPDNSLVGVLTECGLLRIWDIAKKVVSLAAGCLELLNKHGTAAQFSVTNQGMPLIGFPSGNSYSYSTSLQSW 720 
WD40-rpts      _______WD11________________)(_____________________WD12____________________)     

Query      721 LVLATKDAIMYHGIRGTLPRDMDQMQQKFPLLSMQASSQNYFSFTGSMELRHSESWQQCAKIRFIENQIKLCEALQSLDE 800 
WD40-rpts                                                                                      

Query      801 LQHWHKMLTFQLATHGSEKRMRVFLDDLLSMPEPGISQFVPKLELMQCVLDTLKPHSEWNRLHSEYTELLKECKSERQKD 880 
WD40-rpts                                                                                      

Query      881 IFATPAPPQQKTASSAGSSPRSGEATGEEVTEKDGATAVAAAVVAGSRMAVTTGTSTTTTTTASSSLSSSGSSSSTSGSG 960 
WD40-rpts                                                                                      

Query      961 SSSSSSSTSSLSVPQPAPSLSPEIQTLDSPTVCIDDEILSASSSLPPLDTSPVEVSPASTSGGAASTSPAASVAGSAPVS 1040
WD40-rpts                                                                                      

Query     1041 SSKTDQT 1047
WD40-rpts             

12 WD40-repeats found in QUERY=FBpp0071028 (Len=1047):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-44       5.31  334.11  0.00195       17.5%     50.74
  WD 2:  Seg  5    60-98       8.05  447.12  5.9e-05       32.5%     50.45
  WD 3:  Seg  9    99-157      8.32  458.26  4.1e-05       37.5%     56.87
  WD 4:  Seg 13   162-200      9.62  512.08  7.8e-06       42.5%     53.85
  WD 5:  Seg 18   212-252      5.24  331.19  0.00214       27.5%     44.11
  WD 6:  Seg 21   256-310      6.28  374.02  0.00057       32.5%     55.64
  WD 7:  Seg 25   311-353      6.68  390.64  0.00034       17.5%     58.60
  WD 8:  Seg 29   354-393      4.90  316.98  0.00332       12.5%     22.42
  WD 9:  Seg 32   474-512      5.73  351.54  0.00114       12.5%     -2.61
  WD10:  Seg 34   563-596      4.89  316.85  0.00334       10.0%     41.23
  WD11:  Seg 40   630-668      7.64  430.43  9.8e-05       27.5%     50.49
  WD12:  Seg 44   669-715      3.29  250.50  0.02590       10.0%     44.54

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-44     MR-------------------L-------LKPAWVHHDDKQIFSVDIHK----------------DCTKFATGGQ----GSDCGRVVIWN
   WD 2   60-98     -P-------------------K-------MLCQMDQH-LACVNCVRWSQ----------------NGQNLASGSD----D---KLIMIWR
   WD 3   99-157    KSAGSSGVFGTGGMQKNHESWK-------CFYTLRGH-DGDVLDLAWSP----------------NDVYLASCSI----D---NTVIIWD
   WD 4  162-200    -P-------------------H-------SVATLKGH-TGLVKGVSWDP----------------LGRFLASQSD----D---RSIKIWN
   WD 5  212-252    EP-----------------------------FEECGG-TTHILRLSWSP----------------DGQYLVSAHAMNGGG---PTAQIIE
   WD 6  256-310    -W-------------------K-------CDKDFVGH-RKAVTCVRFHNSILSRQENDGSPSKPLQYCCLAVGSR----D---RSLSVWM
   WD 7  311-353    TA----------------LQRP-------MVVIHELF-NASILDLTWGP----------------QECLLMACSV----D---GSIACLK
   WD 8  354-393    FT-------------------E-------EELGKAIS-EEEQNAIIRKM----------------YGKNYVNGLG----K---SAPVLEH
   WD 9  474-512    -G-------------------T-------LPAAAPTE-SAATPLMPLEP----------------LVSKIDLGRL----D---SRLKTQP
   WD10  563-596    --------------------------------ALDYR-LHVSNGHLKTQ----------------HGMLAKVTAS----D---SKEMLWE
   WD11  630-668    -G-------------------C-------PVFPAISL-TSSAVHCAFSP----------------DNSLVGVLTE----C---GLLRIWD
   WD12  669-715    IA-------------------KKVVSLAAGCLELLNK-HGTAAQFSVTN----------------QGMPLIGFPS----G---NSYSYST

   WD40 Template    TG-------------------E-------CLRTLSGH-TSGVTSVSFSP----------------DGKRLVSGSE----D---GTIKVWD