Input parameters:

  Query = FBpp0071062 (Len=651)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0071062, Len=651):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYQNQFIYSRERRRFGRQCRFQDRNELMVSVHPSGRQRLKYIMANPSEKSTQLSRQMALTVMETENVTLDQHGMYHYEGG 80  
WD40-rpts                                                                                      

Query       81 WPKEVNFNDEEQTQRHRKKVEREDSWGEQVLSMIRTTMSVAEQNNTLNIYQNFFADLPPELGHDIKMRFRARVANVFHDL 160 
WD40-rpts                                                                                      

Query      161 WLPARQLRSIEWMPNNSRQFMTQYTNHFAKGERLRPVTDEPFGGTNGFYVWDVKNPLKPRITYDSKQQVSLAKICPKDEN 240 
WD40-rpts                                                          (___________________WD 1____

Query      241 NMVGGTGLGQVCLWGTFKGGLPIRNCPLEVSHRETTSALCWVHSKSNTEFYSGSLDGSIKYWDTRDLKMPMQELLLEPEP 320 
WD40-rpts      ______________)(_____________________WD 2_____________________)                 

Query      321 QERQSRMDSHGVTVLEFEYTIPVRFIIGSDMGHVFVGNRKGMTPMETLLAHYQLFVGPVRSINRNPFFVKNFLVTGDWRA 400 
WD40-rpts                                                   (_________________WD 3_____________

Query      401 RIWSEEVKDSPSTMYFRKNAQILCGAWSTGRCSLFVTGDINGVVDFWDLLLHHRKPIRSVDFKVAIADLVFRPEGDLLAI 480 
WD40-rpts      ___)(___________________WD 4___________________)(___________________WD 5________

Query      481 GLKNGDTHIMTLDESMRQATGKEKALMAAMFEREIVRCKLLEARYDEVRLKRKTLQMAEEERVRKQQQLAPTLELDPDNP 560 
WD40-rpts      __________)                                                                     

Query      561 DQFVMMIEGDEEFRTAITEFQDIILSVERKRSKRQVIMERTVFEEWNPADEKLQGEPVVYTKPERKVQTSGNYDKRTSGE 640 
WD40-rpts                                                                                      

Query      641 PRASQGSMKHQ 651 
WD40-rpts                 

5 WD40-repeats found in QUERY=FBpp0071062 (Len=651):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   213-255      3.38  254.46  0.02294       22.5%     47.14
  WD 2:  Seg 13   256-303      4.45  298.45  0.00590       30.0%     49.07
  WD 3:  Seg 21   366-404      3.85  273.65  0.01271       15.0%     39.57
  WD 4:  Seg 25   405-448      3.02  239.25  0.03653       17.5%     51.44
  WD 5:  Seg 29   449-491      3.09  242.12  0.03346       17.5%     47.35

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  213-255    VK---NPLKPRI---TY------DSKQQVSLAKI--CPKDENNM-VGGTGLGQVCLWG
   WD 2  256-303    TF---KGG--LP---IRNCPLEVSHRETTSALCWVHSK-SNTEF-YSGSLDGSIKYWD
   WD 3  366-404    -E---TLL--AH---YQ------LFVGPVRSINR--NP-FFVKN-FLVTGDWRARIWS
   WD 4  405-448    EEVKDSPS--TM---YF------RKNAQILCGAW--ST-GRCSLFVTGDINGVVDFWD
   WD 5  449-491    LL---LHH--RKPIRSV------DFKVAIADLVF--RP-EGDLL-AIGLKNGDTHIMT

   WD40 Template    TG---ECL--RT---LS------GHTSGVTSVSF--SP-DGKRL-VSGSEDGTIKVWD