Input parameters:

  Query = FBpp0071142 (Len=609)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0071142, Len=609):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTKVTPKGRPKAKTPYKRYFDGQKDTETGDGDLKHVKVFSKNRQNFTGDFISMINKTKKPRPQKAPAKPTKEELEARPKK 80  
WD40-rpts                                                                                      

Query       81 NPIPKEILDKYSRGEQVQPKGVKTRHFKEQQTRKEVYLEYATEQAARTELLLQETAGQLQADEGETTAEFRQSQIAENVD 160 
WD40-rpts                                                                                      

Query      161 IQSSAKHFNLNMEFGPYRMRYTKNGRHLLLGGKRGHVAAFDWVTKRLHCEFNAMESVEDVQWLHVPTMYAVAQKSWVYFY 240 
WD40-rpts         (________________WD 1________________)   (________________WD 2_______________

Query      241 DKKGTELHCIKRLNRVNRLDFLPYHFLLAAGNSAGYASWLDVSIGELVGNFNTGLGDIRMLRHNPRNGVLCIGGGRGVVS 320 
WD40-rpts      )(_________________WD 3_________________)   (_________________WD 4______________

Query      321 MWSPKVREPLAKLLCHSTAMSALAVEPKGQYLVTAGLDRAVKVWDIRMLVHDKPLTHFQLRLPANELDVSQRGMLALSQG 400 
WD40-rpts      __)   (_________________WD 5________________)   (_________________WD 6__________

Query      401 TYLETYSDLLSGGGSGDGTRLPYIRQRCDAFVHGLRFCPYEDVLGVSTAKGFQSLLVPGSGEPNFDAMEDNPYETSKQRR 480 
WD40-rpts      ______)           (_________________WD 7________________)                       

Query      481 EHEVHALLEKIPPELITLDPQEITGVDAPTLQEKIDAKRKLFHLKAPRINMKSRHKMKGRGGTAKAARNKQIVKDAKRKE 560 
WD40-rpts                                                                                      

Query      561 FIAEVREAKKNVIKQHTADEVGAKGKAKTKAPRSVLDRFKPKPPKKQKT 609 
WD40-rpts                                                       

7 WD40-repeats found in QUERY=FBpp0071142 (Len=609):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   164-201      5.13  326.73  0.00246       17.5%     52.59
  WD 2:  Seg  7   205-241      2.94  235.97  0.04036       10.0%     51.57
  WD 3:  Seg 11   242-281      6.76  393.90  0.00031       17.5%     55.40
  WD 4:  Seg 15   285-323      7.04  405.35  0.00021       17.5%     53.39
  WD 5:  Seg 19   327-365      9.05  488.35  1.6e-05       32.5%     54.94
  WD 6:  Seg 23   369-407      3.27  249.77  0.02648        5.0%     28.76
  WD 7:  Seg 26   419-457      3.51  259.74  0.01950       12.5%     44.61

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  164-201    -SAKHFNLNME-FGPYRMRYTKNGRHLLLGGKRGHVAAFD
   WD 2  205-241    -KRLHCEFNAMES-VEDVQWLHVPTMYAVAQ-KSWVYFYD
   WD 3  242-281    KKGTELHCIKRLNRVNRLDFLPYHFLLAAGNSAGYASWLD
   WD 4  285-323    -GELVGNFNTGLGDIRMLRHNPRNGVLCIGGGRGVVSMWS
   WD 5  327-365    -REPLAKLLCHSTAMSALAVEPKGQYLVTAGLDRAVKVWD
   WD 6  369-407    -LVHDKPLTHFQLRLPANELDVSQRGMLALSQGTYLETYS
   WD 7  419-457    -TRLPYIRQRCDAFVHGLRFCPYEDVLGVSTAKGFQSLLV

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD