Input parameters:

  Query = FBpp0071254 (Len=466)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0071254, Len=466):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAALSNLKQCPPFSTLPDLALRHNHIPELERYPQINLNSELLANPAGQRYYGGQSFVSVNEGVLKRIARSFFNGGFWKTL 80  
WD40-rpts                                                                                      

Query       81 EEARSPETREQAPLIAQAGDLIAQFLGLATGLRILPHTQQLSAERIAQFVETRDWLNSDVRYLAWNQHFFCLAVAGVDDV 160 
WD40-rpts                                 (__________________________WD 1______________________

Query      161 VRIYTKSSSATTATVLKSPSQTQITCMAWRPLCASEIVIGCRQGLCFWEVDSTLHLGRTNAPSEIFKYPNNLPITSMQWN 240 
WD40-rpts      ____)(___________________WD 2___________________)           (_________________WD

Query      241 KDGTQLATASIGDRSIIIWQPDTGMMQPLKRLGPPGSLLKWSPDNDWLFAATVDRVFRVWNCHQQWTTERWVCGPGGYVQ 320 
WD40-rpts       3_________________)(__________________WD 4_________________)    (______________

Query      321 TACWSPCGRFLLFVSSAEPILYRLQFVQQSLLSSSADEKEILPIADLNACSIDANRTLVGGPAQQLAWDPHGNYLVVTFK 400 
WD40-rpts      ___WD 5________________)                             (_______________WD 6_______

Query      401 ATNCIAVFRTFIQKFDLQISAAYYLSGETAAEHPSFICFQPLYEDNDRSVLTIAWSSGRIQYYAFD 466 
WD40-rpts      ________)                                                         

6 WD40-repeats found in QUERY=FBpp0071254 (Len=466):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   108-165      7.80  436.75  8.1e-05       17.5%     50.08
  WD 2:  Seg  8   166-209      6.28  373.98  0.00057       12.5%     54.67
  WD 3:  Seg 13   221-260      7.45  422.25  0.00013       22.5%     47.97
  WD 4:  Seg 16   261-301      8.28  456.58  4.4e-05       20.0%     54.54
  WD 5:  Seg 20   306-344      7.38  419.59  0.00014       22.5%     58.04
  WD 6:  Seg 27   374-409      5.20  329.34  0.00227       15.0%     36.08

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  108-165    LAT-GLRILPHTQQLSAERIAQFVETR----DWLNSDVRYLAWNQHFFCLAVAG-VD-DVVRIYT
   WD 2  166-209    KSS-SAT----T--------------ATVLKSPSQTQITCMAWRPLCASEIVIG-CR-QGLCFWE
   WD 3  221-260    -AP-SEI----F--------------K----YPNNLPITSMQWNKDGTQLATASIGD-RSIIIWQ
   WD 4  261-301    PDTGMMQ----P--------------L----KRLGPPGSLLKWSPDNDWLFAAT-VD-RVFRVWN
   WD 5  306-344    -WT-TER----W--------------V----CGPGGYVQTACWSPCGRFLLFVS-SA-EPILYRL
   WD 6  374-409    ------A----N--------------R----TLVGGPAQQLAWDPHGNYLVVTF-KATNCIAVFR

   WD40 Template    TGE-CLR----T--------------L----SGHTSGVTSVSFSPDGKRLVSGS-ED-GTIKVWD