Input parameters:

  Query = FBpp0071303 (Len=313)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0071303, Len=313):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGDQQQLILATGGYDHTIKVWQAHTGNCIKTMRFVETSQVNALDRTPDKTRLAACGYQCIRLYDLESNCTAPVINFDGVQ 80  
WD40-rpts                               (_________________WD 1________________)     (__________

Query       81 KNVTRLGFQEDGNWMFTAGEDHHVRIWDMIAAPPHCSRIFDCEAPVNAACLHPNQVEIAMGSQNGSVFLWDVKSERHERI 160 
WD40-rpts      _______WD 2________________)    (_________________WD 3________________)   (_____

Query      161 VPEVDASIQDVAISPDGRYLAAANNKGNCYIWSLTSQDQKMSTLRPNRKIPAHSRYILRCKFSPDSRLLLTTSGDGTVCI 240 
WD40-rpts      ____________WD 4________________)          (_________________WD 5_______________

Query      241 WKTDDFSKWRELCIENYWVWDAAFSADSKWLFTASSDGIARLWKLQTKSSIRDYTGHTKAITALSFKDEIVGK 313 
WD40-rpts      _)   (_________________WD 6________________)                             

6 WD40-repeats found in QUERY=FBpp0071303 (Len=313):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    26-64       6.83  397.00  0.00028       30.0%     54.82
  WD 2:  Seg  7    70-108      8.94  483.80  1.9e-05       25.0%     52.60
  WD 3:  Seg 11   113-151      8.56  468.15  3.0e-05       17.5%     55.33
  WD 4:  Seg 15   155-193      9.34  500.44  1.1e-05       22.5%     55.53
  WD 5:  Seg 19   204-242      9.11  491.09  1.5e-05       30.0%     45.82
  WD 6:  Seg 22   246-284      9.43  504.35  9.9e-06       30.0%     56.53

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   26-64     GNCIKTMRFVETSQVNALDRTPDKTRLAACG-YQCIRLYD
   WD 2   70-108    TAPVINFDG-VQKNVTRLGFQEDGNWMFTAGEDHHVRIWD
   WD 3  113-151    PPHCSRIFD-CEAPVNAACLHPNQVEIAMGSQNGSVFLWD
   WD 4  155-193    ERHERIVPE-VDASIQDVAISPDGRYLAAANNKGNCYIWS
   WD 5  204-242    LRPNRKIPA-HSRYILRCKFSPDSRLLLTTSGDGTVCIWK
   WD 6  246-284    FSKWRELCI-ENYWVWDAAFSADSKWLFTASSDGIARLWK

   WD40 Template    GECLRTLSG-HTSGVTSVSFSPDGKRLVSGSEDGTIKVWD