Input parameters:

  Query = FBpp0071450 (Len=739)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0071450, Len=739):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATKPGKGDGKQVKGKRTSKNKTDGPGGGGGDADDFDAWMKSRQLLKPDDQLDLTEAELGEEITKVLTPTNTNIVRNLVV 80  
WD40-rpts                                                                                      

Query       81 YSFKEGEFVPAPLPGNTVTLIAFAGNSLHVDSDEGRRQIEESDEIGYPLPMPNYTVVEQRETDNVDGEEGEGEEDDDGAT 160 
WD40-rpts                                                                                      

Query      161 AKDAAVEDEDVEEEDDEEAKGTEGDEGEGEGEGEGAAARQEDDEPAHQAAAVSSKKRKLINQFNYCERGALTYTNPKRNV 240 
WD40-rpts                                                                                      

Query      241 DTQTIPPPRSQFGANVLQWVIYDSYMENFAESQKDGTKKEERKRGKREKKFRDKSAIAEQLNKKYLKCWQILERMINQNI 320 
WD40-rpts                                                                                      

Query      321 YDDIAHDYRYWEDPADEFREGEGNLLPLWKFQYDKTKKMNVTDILFNPSYYDLFAVCFGSHDFMKQTNEGYLCLFTVKNP 400 
WD40-rpts                                                                                     (

Query      401 SFPDYIIQTDCGVMCCDIHPTYPFLAVIGLYDGNVAVYNLREDCKEPLYVSRGVNCKHGECVWQIKWGLDMADGEVNFFS 480 
WD40-rpts      _________________WD 1_________________)           (__________________WD 2_______

Query      481 VSSDGRVFNWILMQNKLWVTTIITLYRENGLVDGPDGTKVTLKSGGSCMVFHPVDNKIFLVGTECGYIYKCSTAFSSKYL 560 
WD40-rpts      __________)                                                                 (___

Query      561 MTYYAHNMSVYRIDFNRFNSNIFVSCGADWMVKVWEDMRPDPLFIFDLGAAVGDVKWAPYSSTVFAAVTTEGKVHVFDLN 640 
WD40-rpts      ______________WD 3_________________)(__________________WD 4__________________)(_

Query      641 VNKYKAICIQAVVPKRKNKLTRLSFNEKLAFIVVGDEKGVTTSLKLSPNLRMMVKPPKKQLYLDQNTLQIGKLEKLLSLV 720 
WD40-rpts      ____________________WD 5____________________)                                   

Query      721 RELPEGSTAVPDAATTVRS 739 
WD40-rpts                         

5 WD40-repeats found in QUERY=FBpp0071450 (Len=739):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   400-439      3.26  249.42  0.02677       20.0%     44.40
  WD 2:  Seg 13   451-491      3.96  278.37  0.01099       20.0%     42.63
  WD 3:  Seg 21   557-596      5.53  343.30  0.00147       27.5%     51.69
  WD 4:  Seg 25   597-638      3.16  245.05  0.03060       15.0%     47.76
  WD 5:  Seg 29   639-685      3.73  268.92  0.01470       17.5%     58.29

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  400-439    -PS-------FPDYII-QTDCGVMCCDIHPTYPF----LA-VIGLYDGNVAVYN
   WD 2  451-491    SR----------GVNC-KHGECVWQIKWGL-DMADGEVNF-FSVSSDGRVFNWI
   WD 3  557-596    -SK-------YLMTYY-AHNMSVYRIDFNRFNSN----IF-VSCGADWMVKVWE
   WD 4  597-638    DMR-------PDPLFIFDLGAAVGDVKWAP-YSS----TVFAAVTTEGKVHVFD
   WD 5  639-685    LNVNKYKAICIQAVVP-KRKNKLTRLSFNE-KLA----FI-VVGDEKGVTTSLK

   WD40 Template    TGE-------CLRTLS-GHTSGVTSVSFSP-DGK----RL-VSGSEDGTIKVWD