Accession: FBpp0071575 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = FBpp0071575 (Len=1544)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0071575, Len=1544):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSEGSGSENAAAAEAAAEAEAATEAALMAEAVAVAYQSDEEEQPEAEDMPEQAGDNQEEDAAEQQDGGEPEADEDADADD 80  
WD40-rpts                                                                                      

Query       81 AMSVENAENESDSGGNAEETAAADRRQATKKELTQIIDKWEQQQTQNGYDPVPTLRSLAEIFEREKDVYRRKDPDPLDSR 160 
WD40-rpts                                                                                      

Query      161 HPYRADPSCQYGLLLKLLFRKDTFMGKLLNDYLRENYFSRQNVSRSSLELNILACRLILEIMPGMETSAVFQTAEGDGTI 240 
WD40-rpts                                                                                      

Query      241 NRIYSWAEDSIEPLQSYATGLLAEAMEVSDIAINFRDLNIRLVPKMIKRLHMLLAISKSATSDVNTSMHNLSADSSTAGM 320 
WD40-rpts                                                                                      

Query      321 LSWVACASNASAPQSPQHNGSGLGASSSQHGDASNMSILFENSRDAFSVSRYYKRMYIPLHPATADTSQMLIMRFLTSLG 400 
WD40-rpts                                                                                      

Query      401 EYQEFLAMAFENNVMQLIFGYLENLDRRDTCLAYEVLKYLASLLCHKKFALEFISHGGLELLLKVPRPSLATTGVSIAIY 480 
WD40-rpts                                                                                      

Query      481 YLAYCEDAMERICSMQRPLISELVRYALWILGRCHDSSKCHATMFFSLSFQFKVILDEFDAQDGLRKLYNVISVLKILDP 560 
WD40-rpts                                                                                      

Query      561 SHNDSDNDSDFNEDVECASRQMVRHVCVALKRYMEAHFFYKYNSFLCQTNAASPAPSSAHYFNQNPTVAAKLTFDQLNDQ 640 
WD40-rpts                                                                                      

Query      641 IRTLQEHTSIRAHWQPVDQLMKLGGITMLLRIIAFSYDWVNSGRSETVRSALDVLSVCCIIPRVYVVLCERLLMLDKTTT 720 
WD40-rpts                                                                                      

Query      721 SGFCSVLGAAAGEISSDAEVIKSALAVLCHCVCSPIIRKDSGTSLIKFGTSSRKNKANHKYAEELIERVWESVCSNNGIV 800 
WD40-rpts                                                                                      

Query      801 VLLSLMQTKGPITDADCIRGMACRALAGLARSDRVRQIVSKLPLFASGQLQTLMRDPILQEKRAEHVIFQKYALELLERV 880 
WD40-rpts                                                                                      

Query      881 SGKTKPLNNPLDPSLSNMHKANVIAQTRIQYNKQQLYQLIFEHLESNGLSQTAQMLQREVGLPLQTPTTRSFHQSPFDYK 960 
WD40-rpts                                                                                      

Query      961 SLPSGSSSLSRNRLRSRMQDVNAAIMGNGDLNRSFGEDSSPAGAGGSNAGDGVSIPNFSSLNTTQTPIKIRRTDRSSVSR 1040
WD40-rpts                                                                                      

Query     1041 SIQKQAMEPGGMSVGLAEDGQLHPKRITLNTIVTEYLTNQHSLCNNPVTTCPQFDLYEPHKCPDPKPSRLLSSNYNLTSR 1120
WD40-rpts                                                                                      

Query     1121 HARTQAGFNTSRFDRRYVHTHFSPWRSIRSADYEDLEFTCCDLAGKYIIVGTQQGDGRVFNMNDGVEQFFSNCHNFSVDA 1200
WD40-rpts                          (__________________WD 1_________________)   (_______________

Query     1201 IKANRAGDLVITSSFWRTPTSILWSIADDEFKLKLRLPDVTYCEFSQTVQDRLLGTQNECATLFDINTGSKVASFTPTIP 1280
WD40-rpts      ___WD 2_________________)(_________________WD 3_________________)               

Query     1281 NLYTKNRATLCRTDELILSDGVLWDVRSGKEIHKFDKFNQCISGVFHPNCLEIIANTEVWDLRTFHLLQTVPVLDQRNCT 1360
WD40-rpts                                  (________________WD 4________________)   (__________

Query     1361 FSPMHVIYGASLGADRDHDMETTTYDTSFNVLDAYDYSSIATIDVKRNINDLSVSANGSLIAVVEDYSGYESKQETYVKI 1440
WD40-rpts      _________WD 5___________________)                                               

Query     1441 YAVGVKKSERSEEEDDEEVPESDEDGSDTGSENTFAIGQNLLGFPLLRNLHGSDNDDEDLDEDDDDGEPLDSDDDSDDDD 1520
WD40-rpts                                                                                      

Query     1521 GSDNGDDDGDFDVLEYFDRSSSDD 1544
WD40-rpts

5 WD40-repeats found in QUERY=FBpp0071575 (Len=1544):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8  1141-1181     4.88  316.26  0.00340       15.0%     46.54
  WD 2:  Seg 11  1185-1225     5.10  325.38  0.00256       17.5%     47.88
  WD 3:  Seg 15  1226-1265     6.14  368.23  0.00068       17.5%     43.61
  WD 4:  Seg 23  1309-1346     3.51  259.66  0.01955       12.5%     34.43
  WD 5:  Seg 26  1350-1393     4.15  286.28  0.00860       17.5%     28.37

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1141-1181   HFSPWR----SIRSADYEDLEFTCCDLAGKYIIVGT--QQGDGRVFN
   WD 2 1185-1225   -GVEQF----FSNCHN-FSVDAIKANRAGDLVITSSFWRTPTSILWS
   WD 3 1226-1265   IADDEF----KLKLRL-PDVTYCEFSQTVQDRLLGT--QNECATLFD
   WD 4 1309-1346   -GKEIH----KFDKFN-QCISGV-FHPNCLEIIANT--EVWDLRTFH
   WD 5 1350-1393   TVPVLDQRNCTFSPMH-VIYGASLGADRDHDMETTT--YDTSFNVLD

   WD40 Template    TGECLR----TLSGHT-SGVTSVSFSPDGKRLVSGS--EDGTIKVWD