Input parameters:

  Query = FBpp0071600 (Len=346)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0071600, Len=346):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFGATQSTNRMNDFEVASPPDDSVSALEFSPSTVQKNFLVAGSWDSTVRCWEVEQNGATVPKSMKTMGGPVLDVCWSDDG 80  
WD40-rpts               (___________________WD 1__________________)     (_________________WD 2_

Query       81 SKVFVASCDKQVKLWDLASDQVMQVAAHDGPVKTCHMVKGPTYTCLMTGSWDKTLKFWDTRSPNPMMTINLPERCYCADV 160 
WD40-rpts      _______________)  (__________________WD 3_________________)   (_______________WD

Query      161 EYPMAVVGTANRGLIIYSLQNSPTEYKRQESPLKYQHRAISIFRDKKKEPTGCALGSIEGRVAIQYVNPGNPKDNFTFKC 240 
WD40-rpts       4_______________)           (_________________WD 5________________)            

Query      241 HRTTGTSGYQDIYAVNDIAFHPVHGTLVTVGSDGTFSFWDKDARTKLKSSETMDQSITKCGFNANGQIFAYAVGYDWSKG 320 
WD40-rpts      (_________________WD 6_________________)   (__________________WD 7______________

Query      321 HEYFNPAKKPQIFLRSCYDELKPRIN 346 
WD40-rpts      ____)                     

7 WD40-repeats found in QUERY=FBpp0071600 (Len=346):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    10-52       6.90  399.80  0.00025       30.0%     56.05
  WD 2:  Seg  5    58-96       8.57  468.66  3.0e-05       25.0%     48.59
  WD 3:  Seg  8    99-139      7.45  422.22  0.00013       27.5%     54.34
  WD 4:  Seg 12   143-178      5.25  331.56  0.00212        7.5%     49.89
  WD 5:  Seg 17   190-228      5.57  344.73  0.00141       17.5%     10.02
  WD 6:  Seg 21   241-280      8.33  458.79  4.1e-05       25.0%     37.84
  WD 7:  Seg 24   284-325      5.96  360.72  0.00086       10.0%     49.63

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   10-52     RMNDFEVASPPDDSVSALEF--SPSTVQKNFLVAGSW---DSTVRCWE
   WD 2   58-96     -ATVPKSMKTMGGPVLDVCW--SDD---GSKVFVASC---DKQVKLWD
   WD 3   99-139    -SDQVMQVAAHDGPVKTCHMVKGPT---YTCLMTGSW---DKTLKFWD
   WD 4  143-178    -PNPMMTINLPER---CYCA--DVE---YPMAVVGTA---NRGLIIYS
   WD 5  190-228    -ESPLKYQHRAISIFRDKKK--EPT---GCALGSIEG---RVAIQYVN
   WD 6  241-280    HRTTGTSGYQDIYAVNDIAF--HPV---HGTLVTVGS---DGTFSFWD
   WD 7  284-325    -RTKLKSSETMDQSITKCGF--NAN---GQIFAYAVGYDWSKGHEYFN

   WD40 Template    TGECLRTLSGHTSGVTSVSF--SPD---GKRLVSGSE---DGTIKVWD