Input parameters:
Query = FBpp0071684 (Len=818)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (FBpp0071684, Len=818):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTILYKVEGKEFSKDSVFPHKKVLCSVSARNIVAFSALQSAIFPASHGGDAGDGSLPGAGLAVGASNSHVYVCDIVTPWE 80
WD40-rpts (__
Query 81 YYKVCSSKSLISVLQWSPNGEQLLLGYVGGRVEIWQPRNQSINLWVLQYYATVPSEDIIEAQFFQNGKGVIFNALKKDHT 160
WD40-rpts _______________WD 1________________)
Query 161 YYAEKFERVEQQRPTLSGFGGVASEGCVLLTSSGLLAAFSLPAIQKTSAAGADGPAHEVVELTPALHSIGISRSFIEHCS 240
WD40-rpts
Query 241 MTPSPSGALNIAFSCGWQQQLVQCFKVSLSLEGELGLEQHLAIKSESQTSIFLGPLDGRRISHLKWTRIANEDVIFIAYA 320
WD40-rpts
Query 321 CPDGAGSQLEQWTLTRRHQSVHALLQGGGGANNKPNEFVQSESWEQVGKVQLNASLADISVTRLSVSTPDSCQVYAILQD 400
WD40-rpts
Query 401 NSVQVLEPNSMKQLNHTQFDRLSDASGAVKFVSGDLTPSSQILLIFDSHAQLYAMQAPLPKQGGSGLLLLEYCIVTGCDA 480
WD40-rpts
Query 481 SDVLLLNLGNLEALVEKLTDNFTRQPSFVRHFYYANFLALKSNICRMQQQEFDNLIILHAISTTFKSLLRPSDLGFQDKG 560
WD40-rpts
Query 561 PADNLAIKLAESIPDVDTVMLNLDAKDFTVEPVMLQSLQQLIQWVTDLALNMLHRLPEEVMKTKLSGKRPSYDISRDIVA 640
WD40-rpts
Query 641 ISSLRELLVMIRIWGLLNTQCLPVYTKTMDNIDVLVILFRLLTRLAQNPAEPDEMLLDECSLLSKQLLIPQPTKFNPTTL 720
WD40-rpts
Query 721 LSAQGFAAVKSGQLQFTSMEEPTCLQDMETEEVVFASSVKDGVSNLQLGARPSHIRRCARCGFVFVNNASKVAKTSALKA 800
WD40-rpts
Query 801 WFSKWLHCHCGGFWKQVH 818
WD40-rpts
1 WD40-repeats found in QUERY=FBpp0071684 (Len=818):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 5 78-116 5.19 328.95 0.00229 20.0% 47.51
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 78-116 PWEYYKVCSSKSLISVLQWSPNGEQLLLGYVGGRVEIWQ
WD40 Template GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD