Input parameters:

  Query = FBpp0071851 (Len=1171)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0071851, Len=1171):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDEANKEDVKRASLSNSTVTIRPRLIYGLRSDVIGNIHFNLTKEVIYPVEGVLAFHDYVQNKQRFLRLPEDTRPEVISIS 80  
WD40-rpts                                                                  (___________________

Query       81 SHRKLLAVVERHSKNGRYISIYELATLKKRRHLELPSNHRNAEIQQMIFTNDSRSVALITRPPEETLIMLVLDKTSTVIE 160 
WD40-rpts      WD 1__________________)(_____________________WD 2_____________________) (_______

Query      161 GRATIPGSHGGAECIAGNPNDCNFMAVGGERTLLLMSKSERGFSISNNLKVKYRVTSMAFLSLDLLMIGTSDDQLILVEN 240 
WD40-rpts      _____________WD 3___________________)(___________________WD 4__________________)

Query      241 GEQKLAQKASDADTVDLMIDQEVFDRDKELQEQRFLPTQAVSLPDRRVLCMTAFPKGFAYIIFNRAFVFERVSKFKFERK 320 
WD40-rpts      (_________________WD 5________________)(______________WD 6______________)       

Query      321 TILTVPTNLYAEHMYQILNLAIDHKQETVIVTTSHCQIYVGILIVPETLKTKQLKFEPLGVLIHTGEIIAMSVCAWKPII 400 
WD40-rpts           (________________WD 7_______________)            (_________________WD 8____

Query      401 MTASRDQTIRIWNYETALVELVRKFQVDVNIVELSLTGQMAAIGFSDQLRITQIFMDDLNIVKTYNFPHCNAVRYSNFGH 480 
WD40-rpts      ____________)  (________________WD 9________________)   (________________WD10___

Query      481 MMAAAYDNNIAITSVYKLDVLINLKGHNGIVLSVAWSRTDKFLISGGAEGAIYLWDIETGARLQEIVQKGTEYVTISCST 560 
WD40-rpts      _____________)   (_________________WD11________________)   (_________________WD1

Query      561 NDPLTIYAGTSIGTIREFQDSTLMREITIPSRTKGSVSDVCLARSDLIMFVADHEGNLFNMQLPFLEAGGGTFTNFRFFD 640 
WD40-rpts      2_________________)(___________________WD13__________________)       (__________

Query      641 GPVNKLRFSYDGTLLFAISNKGTLAIWAMDNIEGKVPYMDQDLMRSQEVLIPRSQLNDKIEQIANLELRLKQQAEEFQYQ 720 
WD40-rpts      _______WD14________________)                                                    

Query      721 LSQNEIFDGQQLQEVHRSYCSALEELKELNNEIEARHTEEMNHITFQINSIREEHRIQLDTLATQYSERMLIEYQKFTNL 800 
WD40-rpts                                                                                      

Query      801 RENMLELRESYEDKLKNSTGTLQDTVEALENNYKQQLNERKELIRDLMKEMQDKKAEFIEYCREVELENDRNMVSTQTEY 880 
WD40-rpts                                                                                      

Query      881 ENKLTTERNETQMWRGKAGVLQKKFESQSREIDNLLEEVEILKEEHHKSQRNIQKQMRNIEDLQKDIADRDYAINGKEKR 960 
WD40-rpts                                                                                      

Query      961 IQDLLHKNQELDKYKQVLGHKIAELKAQIEPREFQINDKRKHIIEMEAELEGLNQNNVQLELQLKEMRDKYLSNVAELRT 1040
WD40-rpts                                                                                      

Query     1041 ERHRAKASRECLHSICSDIYYVAGEINSAEALKKAVKELFRKHASDDELKRFVTLDAEVRDEFMRQRRQIENVLDRYKSV 1120
WD40-rpts                                                                                      

Query     1121 AEDKSVQKKYDKLFKENVILIEEIEKLNETNKMLRSKVKEDLRRSTKTIHK 1171
WD40-rpts                                                         

14 WD40-repeats found in QUERY=FBpp0071851 (Len=1171):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    61-103      3.62  264.13  0.01704       12.5%     46.30
  WD 2:  Seg  9   104-151      3.99  279.32  0.01067        7.5%     42.09
  WD 3:  Seg 13   153-197      5.87  357.16  0.00096       15.0%     49.17
  WD 4:  Seg 17   198-240      4.29  291.82  0.00725       22.5%     39.26
  WD 5:  Seg 21   241-279      3.52  260.06  0.01931        5.0%     24.72
  WD 6:  Seg 23   280-313      4.15  286.22  0.00862       10.0%     34.68
  WD 7:  Seg 27   326-362      5.32  334.53  0.00193        7.5%     44.23
  WD 8:  Seg 30   375-413      6.57  386.02  0.00039       20.0%     46.86
  WD 9:  Seg 33   416-453      4.84  314.69  0.00357       15.0%     54.57
  WD10:  Seg 37   457-494      4.71  309.24  0.00423       12.5%     53.34
  WD11:  Seg 41   498-536      9.10  490.76  1.5e-05       40.0%     56.03
  WD12:  Seg 45   540-579      5.21  329.95  0.00222       22.5%     53.36
  WD13:  Seg 49   580-622      4.60  304.87  0.00484       12.5%     50.58
  WD14:  Seg 53   630-668      7.08  407.07  0.00020       27.5%     52.74

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   61-103    -N------K---QRFLR---LPEDTRPEVISISS-HRKLLAVVERHSKNGRYISIYE
   WD 2  104-151    LATLKKRRH---LELPS---NHRNAEIQQMIFTN-DSRSVA--LITRPPEETLIMLV
   WD 3  153-197    DK-TSTVIE---GRATI---PGSHGGAECIAGNP-NDCNFM----AVGGERTLLLMS
   WD 4  198-240    KS------ERGFSISNN---LKVKYRVTSMAFLS-LDLLMI----GTSDDQLILVEN
   WD 5  241-279    -G------E---QKLAQ---KASDADTVDLMIDQ-EVFDRD----KELQEQRFLPTQ
   WD 6  280-313    ---------------AV---SLPDRRVLCMTAFP-KGFAYI----IFNRAFVFERVS
   WD 7  326-362    ------------PTNLY---AEHMYQILNLAIDH-KQETVI----VTTSHCQIYVGI
   WD 8  375-413    -K------F---EPLGV---LIHTGEIIAMSVCA-WKPIIM----TASRDQTIRIWN
   WD 9  416-453    -T------A---LVELV---RKFQVDVNIVELSL-TGQMAA----IGFSD-QLRITQ
   WD10  457-494    -D------D---LNIVK---TYNFPHCNAVRYSN-FGHMMA----AAY-DNNIAITS
   WD11  498-536    -L------D---VLINL---KGHNGIVLSVAWSR-TDKFLI----SGGAEGAIYLWD
   WD12  540-579    -G------A---RLQEI---VQKGTEYVTISCSTNDPLTIY----AGTSIGTIREFQ
   WD13  580-622    DS------T---LMREITIPSRTKGSVSDVCLAR-SDLIMF----VADHEGNLFNMQ
   WD14  630-668    -G------G---TFTNF---RFFDGPVNKLRFSY-DGTLLF----AISNKGTLAIWA

   WD40 Template    TG------E---CLRTL---SGHTSGVTSVSFSP-DGKRLV----SGSEDGTIKVWD