Input parameters:

  Query = FBpp0071957 (Len=336)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0071957, Len=336):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNQFGQPKQTQQQDYELPNPPNDTISALEFSPRSSSWNAICAGSWDNTVRIWEVQADRLVPKVMNSLEGTPFDVTWNDSG 80  
WD40-rpts                (___________________WD 1__________________)(___________________WD 2___

Query       81 NKVYLSDSSGQVTEWDLESNQLRKVGLHARAARTCHWVGPYLATTSWDKSIRFWDPRAAIELTRMELPDRSYAADVLNDV 160 
WD40-rpts      _______________)  (________________WD 3_______________)(_________________WD 4___

Query      161 AVVACGDRSILAYTLRGGPVEQGRMKSPGESNTQVRSVALHQNRDLTSWLIAKTNGMVFDQSMAHRTVSFPIRCHRRENS 240 
WD40-rpts      _____________)       (__________________WD 5_________________)              (___

Query      241 GILDVYAVNEVKVNMVTQHIATVGSDGVFCFWDSQMRSKLLESKVHPQPITKCAISGDGKLFAYALGYDWSKGHEYSDSS 320 
WD40-rpts      _____________WD 6_______________)   (_________________WD 7________________)     

Query      321 IKPHIFLRPFETNVAA 336 
WD40-rpts                      

7 WD40-repeats found in QUERY=FBpp0071957 (Len=336):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    11-53       6.72  392.25  0.00032       20.0%     54.61
  WD 2:  Seg  5    54-96       7.76  435.16  8.5e-05       12.5%     55.95
  WD 3:  Seg  9    99-135      6.40  379.15  0.00048       25.0%     52.38
  WD 4:  Seg 13   136-174      4.39  295.90  0.00639       12.5%     37.92
  WD 5:  Seg 17   182-222      4.30  292.27  0.00715       10.0%     32.41
  WD 6:  Seg 22   237-273      7.20  412.00  0.00017       15.0%     37.85
  WD 7:  Seg 25   277-315      7.51  424.88  0.00012       20.0%     51.25

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   11-53     QQQ---DYELPNPPNDTISALEFSPRSSSWN--AICAGSWDNTVRIWE
   WD 2   54-96     VQADRLVPKVMNSLEGTPFDVTWNDSG---N--KVYLSDSSGQVTEWD
   WD 3   99-135    -SN---QLRKVGLHARAARTCHWV--G---P--YLATTSWDKSIRFWD
   WD 4  136-174    -PR---AAIELTRMELPDRSYAADVLN---D--VAVVACGDRSILAYT
   WD 5  182-222    -QG---RMKSPGESNTQVRSVALHQNR---DLTSWLIAKTNGMVFDQS
   WD 6  237-273    ------RENSGILDVYAVNEVKVNMVT---Q--HIATVGSDGVFCFWD
   WD 7  277-315    -RS---KLLESKVHPQPITKCAISGDG---K--LFAYALGYDWSKGHE

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFSPDG---K--RLVSGSEDGTIKVWD