Input parameters:

  Query = FBpp0071994 (Len=769)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0071994, Len=769):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNIYNKLRAREHGYGNERTYDFALRRLSVAKEDSWRGIAPANYCPDFNPEPPIFSAKFANCDGYRHILAIANEDGKITLQ 80  
WD40-rpts                                             (__________________WD 1__________________

Query       81 DTTQRNHQPEEQSLVGPQCHFNAVFDLEWAPGQMRFVSASGDHTARLWEVAGSGIRGLNSYVGHTRSVKSAAFKRTDPAV 160 
WD40-rpts      )         (_________________WD 2________________)(____________________WD 3______

Query      161 FATGGRDGAILIWDIRANLNMDLTSRVDNCIYSGHTGGPGTPVSQRKQRTRTPKMAGGTTSSSITGLAFQDNDTLISCGA 240 
WD40-rpts      _____________)                                 (__________________WD 4__________

Query      241 GDGVIKVWDLRRNYTAYKKEPLPRHKLPYAGSSTFRGFTNLIVDASGTRLYANCMDNTIYCYNLASYSQRPLACYKGLLN 320 
WD40-rpts      ________)               (_________________WD 5________________)     (___________

Query      321 STFYIKSCLSPDGKYLLSGSSDERAYIWNLDHAEEPLVALAGHTVEVTCVAWGSSHDCPIVTCSDDARHKIWRIGPDLDG 400 
WD40-rpts      _______WD 6_________________)    (_________________WD 7_________________)       

Query      401 LSEAERAEKYRGTASYVREFGKKAFGPSSGNHKYNLRDLESTPRSLKRLMDQNERTPGSVEKTTTKRSFLEMLGVAGQET 480 
WD40-rpts         (________________WD 8_______________)                                  (_____

Query      481 EATEQPQKRAKPLESRGRRLFGPSSQETACRHIQLQSINEEDASPSKRQKENSAAEDVSPLHKLLSTPSHSPLSENVNHV 560 
WD40-rpts      ____________WD 9________________)      (_________________WD10________________)  

Query      561 YTSPPTTSAAAAAVAADALNPPPISAAIYSPTSNLPNYVLDGEAPHLGIMSPKRKAKEKVDWLTNIRKQKLMSGRAHVTL 640 
WD40-rpts                                                                                      

Query      641 SEKISEEQQADVLASPRLQSLRQSECSPRIHASPRRRISHTDGGGGTPAGSSSHSHSQSQPKTPTSSRRNSETTLLRFFS 720 
WD40-rpts                                                                                      

Query      721 IQRSSSVPAEETTTTNAAPSSSDPHPPAVTAPAATPLSMRTPTTAVGSD 769 
WD40-rpts                                                       

10 WD40-repeats found in QUERY=FBpp0071994 (Len=769):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    40-81       5.55  344.10  0.00143       20.0%     44.16
  WD 2:  Seg  8    91-129      8.72  474.67  2.5e-05       27.5%     46.20
  WD 3:  Seg 11   130-174      7.99  444.81  6.3e-05       35.0%     55.66
  WD 4:  Seg 18   208-249      8.18  452.58  4.9e-05       27.5%     48.38
  WD 5:  Seg 22   265-303      6.29  374.65  0.00056       22.5%     42.64
  WD 6:  Seg 25   309-349      7.41  420.65  0.00013       32.5%     52.51
  WD 7:  Seg 28   354-393      7.48  423.65  0.00012       37.5%     45.61
  WD 8:  Seg 32   404-440      5.31  334.01  0.00196       17.5%     31.70
  WD 9:  Seg 37   475-513      4.73  310.25  0.00410       15.0%     33.75
  WD10:  Seg 40   520-558      6.16  369.11  0.00066       15.0%      2.07

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   40-81     -P----ANYCPDF--NPEPPI--FSAKF-A-NCDGYRHILAIANEDGKITLQD
   WD 2   91-129    -E----QSLVGPQ--CHFNAV--FDLEW-A-PGQM---RFVSASGDHTARLWE
   WD 3  130-174    VAGSGIRGLNSYV--GHTRSV--KSAAF-KRTDPA---VFATGGRDGAILIWD
   WD 4  208-249    QR----TRTPKMAGGTTSSSI--TGLAF-Q-DNDT---LISCGAGDGVIKVWD
   WD 5  265-303    -H----KLPYAGS--STFRGF--TNLIV-D-ASGT---RLYANCMDNTIYCYN
   WD 6  309-349    -Q----RPLACYK--GLLNSTFYIKSCL-S-PDGK---YLLSGSSDERAYIWN
   WD 7  354-393    -E----EPLVALA--GHTVEV--TCVAWGS-SHDC---PIVTCSDDARHKIWR
   WD 8  404-440    -A----ERAEKYR--GTASYV--RE--F-G-KKAF---GPSSGNHKYNLRDLE
   WD 9  475-513    -V----AGQETEA--TEQPQK--RAKPL-E-SRGR---RLFGPSSQETACRHI
   WD10  520-558    -E----EDASPSK--RQKENS--AAEDV-S-PLHK---LLSTPSHSPLSENVN

   WD40 Template    TG----ECLRTLS--GHTSGV--TSVSF-S-PDGK---RLVSGSEDGTIKVWD