Input parameters:

  Query = FBpp0072049 (Len=348)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0072049, Len=348):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNPESRDLDLRKGDVERPHFEAVTTLSDSQAIRSVDFHPNGKLYAVGSNSKTFRICQYPALSKLRHGHQAAVYPPSVLCK 80  
WD40-rpts                    (___________________WD 1__________________)        (______________

Query       81 RTKHHRGSIYCTCWSRDGELIATGSNDKTIKYMRFNNDTNQLVGHEMELNMHDGTVRDMCFLDDSSTKSRLLASGGAGDC 160 
WD40-rpts      ________WD 2_____________________)        (___________________WD 3______________

Query      161 KIYITDCGTGTPFQAYSGHTGHILSLYSWNNAMFVSGSQDQTIRFWDLRVNVSVNTLDNDRKDGGLESSAVTAVCVDPTG 240 
WD40-rpts      _____)   (________________WD 4________________)          (_________________WD 5_

Query      241 RLLVSGHADSSCTLYDIRGNRPIQRFYPHTAEIRCVRFSPSAYYMLTCSYDNSIRLTDLQGDLAHELSSVVVAEHKDKAI 320 
WD40-rpts      _______________)   (_________________WD 6________________)       (______________

Query      321 TIRWHPTEFSFISTSADKTATLWALPPS 348 
WD40-rpts      ___WD 7________________)    

7 WD40-repeats found in QUERY=FBpp0072049 (Len=348):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    15-57       8.62  470.55  2.8e-05       25.0%     57.97
  WD 2:  Seg  7    66-114      8.72  474.98  2.5e-05       27.5%     47.25
  WD 3:  Seg 11   123-166      7.15  410.02  0.00019       25.0%     48.08
  WD 4:  Seg 15   170-207      8.89  481.79  2.0e-05       40.0%     53.79
  WD 5:  Seg 20   218-256      8.99  486.06  1.7e-05       30.0%     39.84
  WD 6:  Seg 23   260-298      9.46  505.35  9.6e-06       25.0%     57.82
  WD 7:  Seg 27   306-344      8.07  448.20  5.7e-05       17.5%     44.81

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   15-57     VER------PHFEAVTTLSDSQAIRSVDFHPNGK-----LYAVGSNSKTFRICQ
   WD 2   66-114    HGHQAAVYPPSVLCKRTKHHRGSIYCTCWSRDGE-----LIATGSNDKTIKYMR
   WD 3  123-166    VGH----------EMELNMHDGTVRDMCFLDDSSTKSRLLASGGAGDCKIYITD
   WD 4  170-207    -GT---------PFQAYSGHTGHILSL-YSWNNA-----MFVSGSQDQTIRFWD
   WD 5  218-256    DND----------RKDGGLESSAVTAVCVDPTGR-----LLVSGHADSSCTLYD
   WD 6  260-298    -NR---------PIQRFYPHTAEIRCVRFSPSAY-----YMLTCSYDNSIRLTD
   WD 7  306-344    -EL---------SSVVVAEHKDKAITIRWHPTEF-----SFISTSADKTATLWA

   WD40 Template    TGE---------CLRTLSGHTSGVTSVSFSPDGK-----RLVSGSEDGTIKVWD