Input parameters:

  Query = FBpp0072328 (Len=988)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0072328, Len=988):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDRIIKSEIKKEQITGIPSVALHGIENSMQDDRDVNTDVEEDFTEEELELFTDQDSDTGDSDVSLTQPEAARSVLLSNAP 80  
WD40-rpts                                                                                      

Query       81 MRKYPFKLKQSESGNVLTVHHTIKEAGQALRIQIAACCFNELSNKLVVIDKRGNVFVFDFVRKRYWRLGFRMPKAKLIRP 160 
WD40-rpts                            (________________WD 1_______________)                     

Query      161 SPLHGSDYIVGNKTGHIFTIDVDNSILGVDGEVGSAALEELSWSNSLQNARSSIALMRFGSDALLVNLHTLEVSHQLDFD 240 
WD40-rpts                                                                           (__________

Query      241 QSRYTLKFAAFLPHSDQFFIGFSNDSLHVWSSHSLSTLRMGQPIKARNRKLRLLPAAESIPEIVLRSPDDSDLEEDLTFD 320 
WD40-rpts      ________WD 2__________________)                                   (_____________

Query      321 CQHYDFADGMLLSYCFTPDGNKMCLSTLDGYLLLLSVASFDLEKMYRLTDFTLHQMAFLSQPKERIVFGITTRNQAVMLD 400 
WD40-rpts      _________WD 3______________________)   (_________________WD 4________________)  

Query      401 LANTDHKLIVQRSNARSLSLSRDGKLLSVTSRCGEVNVWSTCRIFNALQAQIRCLSQVKSTFKQPNPLPPCSVGGGVSKE 480 
WD40-rpts       (_________________WD 5________________)                                        

Query      481 LRDLLNPQRLKTMLKEYGCYPEKYRYLIWTSLLDLPCNGPQFQELIKLGAPLLVRNRAKKLKIRNDHQRRVVIKIWSCLA 560 
WD40-rpts                                                                                      

Query      561 QWCKVLAHADFMPHLIFPFVKRMPKNSLVCFELIATLVLNHFQLCFEFHPLPPSNYLAMCENILQHCDEQLCKFYKSQEM 640 
WD40-rpts                                                                                      

Query      641 LPKDFAWPLLSTAFSEVLEEEQWLSLWDNIFSEPPWFPVFLVVAYNLINREIILRLPDKRSVLFFFHDQNPVDISKLLSK 720 
WD40-rpts                                                                                      

Query      721 ARKLMSKCALALHPQRFMTHFSPIPKGVYPKFLKYPSEWIDEQEYQAVSLIKHNQEIDARIRHLELEEVKIMERLETGLK 800 
WD40-rpts                                                                                      

Query      801 QEEHARRLKEMERVYQDTIHREEERITCQRKMLLTYQMEVRRRKSEVITKLQESEQRRKILEMEKDMDLLMHSIERERRR 880 
WD40-rpts                                                                                      

Query      881 HNQEMQLAEDEIRNQEMELLAQRYYSDTEGAPLAQKYYDKIQKLCYQRDQLQKNLRDMTMEQLRTPATSSVQFSPQLVDI 960 
WD40-rpts                                                                                      

Query      961 ENSIFEIQREFTEIITTDKTLEYRRNLT 988 
WD40-rpts                                  

5 WD40-repeats found in QUERY=FBpp0072328 (Len=988):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   103-139      5.11  325.64  0.00254       15.0%     35.57
  WD 2:  Seg 12   230-271      7.50  424.42  0.00012       25.0%     47.32
  WD 3:  Seg 18   307-356      5.57  344.83  0.00140       17.5%     40.15
  WD 4:  Seg 21   360-398      4.84  314.59  0.00358        5.0%     32.12
  WD 5:  Seg 23   402-440      5.91  358.96  0.00090       32.5%     17.66

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  103-139    -------------IKEAGQALRIQIA--ACCFNELSNKLVVIDKRGNVFVFD
   WD 2  230-271    TLE----------VSHQLDFDQSRYTLKFAAFLPHSDQFFIGFSNDSLHVWS
   WD 3  307-356    SPDDSDLEEDLTFDCQHYDFADGMLL--SYCFTPDGNKMCLSTLDGYLLLLS
   WD 4  360-398    -FD----------LEKMYRLTDFTLH--QMAFLSQPKERIVFGITTRNQAVM
   WD 5  402-440    -AN----------TDHKLIVQRSNAR--SLSLSRDGKLLSVTSRCGEVNVWS

   WD40 Template    TGE----------CLRTLSGHTSGVT--SVSFSPDGKRLVSGSEDGTIKVWD