Input parameters:

  Query = FBpp0072437 (Len=684)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0072437, Len=684):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTPKSIQDDTYVEQFMKYNLNVMHQMTNFTTMVAKSTTRSRTRSSVRAGIGGNKQSIDDLMNGILYETINWEPYSTVEAL 80  
WD40-rpts                                                                                      

Query       81 EEAYEPKPYTKSFLKITLRKSDFFEIHSQTQTTVAKGSPEGDDAERDNRNYEYLTIGKGKIRRRSDNDAQTDTLLFTTRA 160 
WD40-rpts                                                                                      

Query      161 VNTILITKATVSSYVSNFEMYDTLNNITKEFATATMSSVKDLTSALAQTEDADTFEDDEAVAEKDKVSSQIERLFRSPEF 240 
WD40-rpts                                                                                      

Query      241 RNAIMYMGRTLSSNTNEAGLRRFRNFDQVERWNAEAEYVYSMNLLFRLVPEPSKDERKAVSDIDFCRSNGDILAVAYGLY 320 
WD40-rpts                                                                                      

Query      321 SFSSQHVPTSGSVFLWSIKNPGEPERAYYYDVPVTAINFSPFLPSLLAIGLYDGSVEVRDVSSLQDTPVAVSQRSTSPGS 400 
WD40-rpts                       (___________________WD 1__________________)           (________

Query      401 SPVVAIRWIKQVSDDDHETDIDPFLSLSQDGSVTRFRIIKSPFLLGFTQMILERVEGHPEGIFVHPSSRIPCESNRHPQG 480 
WD40-rpts      ____________WD 2____________________)                                           

Query      481 LSITTHPLHKDIYYVLTDEGCIHKCSINYQHQYLEVLRCHDGGVTVMEFSPWSPKLFLTCGNDWFVRIWVDGITRPLLEL 560 
WD40-rpts                                    (_________________WD 3_________________)(_________

Query      561 LDEMTPVHWAKWSPTHSTIIVTVNRETANVWDFRRNLLRPMSKHKMDSSFNTVARFSHCGRTLVIGNERGNTLFNALNDM 640 
WD40-rpts      _________WD 4__________________)(___________________WD 5___________________)    

Query      641 PFSPHFQYDELEKAIFKAIGNDHELLMELKSIGFFGYPNKKAVF 684 
WD40-rpts                                                  

5 WD40-repeats found in QUERY=FBpp0072437 (Len=684):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   338-380      3.67  266.43  0.01587       27.5%     43.99
  WD 2:  Seg 12   392-437      3.77  270.32  0.01408       22.5%     42.63
  WD 3:  Seg 20   511-550      5.54  343.53  0.00146       30.0%     50.24
  WD 4:  Seg 24   551-592      4.76  311.28  0.00397       25.0%     54.81
  WD 5:  Seg 28   593-636      3.87  274.47  0.01239       25.0%     54.58

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  338-380    IK----NPGEPERAYYYDVPVTAINF---------SPFLPSLLAIGLYDGSVEVRD
   WD 2  392-437    SQ-------R--STSPGSSPVVAIRWIKQVSDDDHET-DIDPFLSLSQDGSVTRFR
   WD 3  511-550    -H----QYLE--VLRCHDGGVTVMEF---------SPWSPKLFLTCGNDWFVRIWV
   WD 4  551-592    DG--ITRPLL--ELLDEMTPVHWAKW---------SP-THSTIIVTVNRETANVWD
   WD 5  593-636    FRRNLLRPMS--KHKMDSSFNTVARF---------SH-CGRTLVIGNERGNTLFNA

   WD40 Template    TG----ECLR--TLSGHTSGVTSVSF---------SP-DGKRLVSGSEDGTIKVWD