Input parameters:

  Query = FBpp0072438 (Len=764)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0072438, Len=764):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSASVRNTVTSQENGSIFKRSSNLDNELKKKSVVVNQTQAEESKAKKKDTTHYYSVETLADLQYRSQIKVLEKIYGEEVD 80  
WD40-rpts                                                                                      

Query       81 MTPKSIQDDTYVEQFMKYNLNVMHQMTNFTTMVAKSTTRSRTRSSVRAGIGGNKQSIDDLMNGILYETINWEPYSTVEAL 160 
WD40-rpts                                                                                      

Query      161 EEAYEPKPYTKSFLKITLRKSDFFEIHSQTQTTVAKGSPEGDDAERDNRNYEYLTIGKGKIRRRSDNDAQTDTLLFTTRA 240 
WD40-rpts                                                                                      

Query      241 VNTILITKATVSSYVSNFEMYDTLNNITKEFATATMSSVKDLTSALAQTEDADTFEDDEAVAEKDKVSSQIERLFRSPEF 320 
WD40-rpts                                                                                      

Query      321 RNAIMYMGRTLSSNTNEAGLRRFRNFDQVERWNAEAEYVYSMNLLFRLVPEPSKDERKAVSDIDFCRSNGDILAVAYGLY 400 
WD40-rpts                                                                                      

Query      401 SFSSQHVPTSGSVFLWSIKNPGEPERAYYYDVPVTAINFSPFLPSLLAIGLYDGSVEVRDVSSLQDTPVAVSQRSTSPGS 480 
WD40-rpts                       (___________________WD 1__________________)           (________

Query      481 SPVVAIRWIKQVSDDDHETDIDPFLSLSQDGSVTRFRIIKSPFLLGFTQMILERVEGHPEGIFVHPSSRIPCESNRHPQG 560 
WD40-rpts      ____________WD 2____________________)                                           

Query      561 LSITTHPLHKDIYYVLTDEGCIHKCSINYQHQYLEVLRCHDGGVTVMEFSPWSPKLFLTCGNDWFVRIWVDGITRPLLEL 640 
WD40-rpts                                (___________________WD 3___________________)(_________

Query      641 LDEMTPVHWAKWSPTHSTIIVTVNRETANVWDFRRNLLRPMSKHKMDSSFNTVARFSHCGRTLVIGNERGNTLFNALNDM 720 
WD40-rpts      _________WD 4__________________)(___________________WD 5___________________)    

Query      721 PFSPHFQYDELEKAIFKAIGNDHELLMELKSIGFFGYPNKKAVF 764 
WD40-rpts                                                  

5 WD40-repeats found in QUERY=FBpp0072438 (Len=764):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11   418-460      3.53  260.33  0.01915       27.5%     44.34
  WD 2:  Seg 16   472-517      3.56  261.86  0.01827       22.5%     42.31
  WD 3:  Seg 24   587-630      5.41  338.16  0.00172       30.0%     50.11
  WD 4:  Seg 28   631-672      4.51  301.10  0.00544       25.0%     55.80
  WD 5:  Seg 32   673-716      3.63  264.57  0.01681       25.0%     53.97

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  418-460    IK----NPGEPERAYYYDVPVTAINF---------SPFLPSLLAIGLYDGSVEVRD
   WD 2  472-517    SQ-------R--STSPGSSPVVAIRWIKQVSDDDHET-DIDPFLSLSQDGSVTRFR
   WD 3  587-630    IN-YQHQYLE--VLRCHDGGVTVMEF---------SPWSPKLFLTCGNDWFVRIWV
   WD 4  631-672    DG--ITRPLL--ELLDEMTPVHWAKW---------SP-THSTIIVTVNRETANVWD
   WD 5  673-716    FRRNLLRPMS--KHKMDSSFNTVARF---------SH-CGRTLVIGNERGNTLFNA

   WD40 Template    TG----ECLR--TLSGHTSGVTSVSF---------SP-DGKRLVSGSEDGTIKVWD