Input parameters:

  Query = FBpp0072679 (Len=1205)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0072679, Len=1205):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFVYLSKKIAIPNNVKLNCIAWNKEEGYIAVAGTDGLLKVLKLDQATPNGQSKGGLAAVSNLSMNQTLDGHKESVRVVTW 80  
WD40-rpts      (__________________WD 1__________________)                   (_________________W

Query       81 NDAQQKLTSSDTDGVIMVWMLYKGSWYEEMTNDRKKSTVASMSWTSDGSRICIVYEDGAIIVGSVDGNRIFGKELKGTHL 160 
WD40-rpts      D 2________________)(___________________WD 3___________________)  (_____________

Query      161 TGVQWSPDNRLILFALANGECHLYDNQGNFAMKLHIQCVNISGGSSSRGHRIASICWFSGRVVQSRKRPVLAICYENGRV 240 
WD40-rpts      ____WD 4________________)                               (_________________WD 5__

Query      241 QIMRNENDDAPAIFDTGMRNVDAKWNHDGTVLAICGTTLDAVSPTSQRDTNQVCFYSPLGKIYRTLKVPGTDITSLSWEG 320 
WD40-rpts      ______________)(__________________WD 6_________________)   (________________WD 7

Query      321 KSLRIAMAVDSFIYFANIRPDYIWCYFEKTVVFLNSGSATRESPMSVITFWNTVSNQSFLKEVEPTLCLASSSEHCVLGV 400 
WD40-rpts      ________________)                                   (_________________WD 8______

Query      401 ECVSSNIKEIALSTLENRSNPADDRVYQLLLCNSIGTTVDSKYTDIRPCFVGINSSYVAIASQEEILIWHYHTPKSASTL 480 
WD40-rpts      __________)                                                             (_______

Query      481 HNVKARKEKRFHIDDTPTGVEMAKDLMLSSSSGDGHSTQRGISDPICALALSEKLLLVARESGAINEYSIANVALRNRHL 560 
WD40-rpts      __________WD 9_________________)                                     (__________

Query      561 MNAKVYKMAINCNSTRAAIIDHMGVMTLLDLDDNRETQLNFSRVERKDVWAVSWATDNPLLLALMEKTRMYIFRGNDPEE 640 
WD40-rpts      ________WD10_________________)(___________________WD11___________________)      

Query      641 PVSCSGYICTFEDLEITSVLLDDIISVGELQNFSHIIQLRVKSLRDTDDLLEHVGLEDAKQFIEDNPHPRLWRLLAESAL 720 
WD40-rpts                                                                                      

Query      721 KKLELETAENAFVRCAHYPGIKLVKRLRTIHSKELQRAEISAFYGEFEEAEKLYLDADRRDLAIELRMTLCDWFRVVQLY 800 
WD40-rpts                                                                                      

Query      801 RMGGSGVSDQQMEIAWREIGHHFANLRSWESAREYYEKSHYLEGYMEALYHLEQFDDLEKCVERLPEKSPLLPKLAEMLA 880 
WD40-rpts                                                                                      

Query      881 SVGMCSEAVQAHLRFGDQKAAVATCVNLRQWGEAVELAQRFQLPQVQTLIAKHAAQLLQEGRLKEAIEMQRNAGRHLDAA 960 
WD40-rpts                                                                                      

Query      961 RLLSQMAEREQEKRAPLLRIKKLYVLAALLAEEHLKAVATTEIDYASGRNTLLDSIALEDAAAIERLWHCAEAYHFMLLA 1040
WD40-rpts                                                                                      

Query     1041 QRQLRFGIVHSAVVTAVRLRDYEDVLPPEHIYSLLALASCADRAFGTCSKAFMKLEQQAHLPEATLQRYEELAAGIFAKY 1120
WD40-rpts                                                                                      

Query     1121 DPEDTTGDRVDCYSCGVPVPDSSPSCPECNARFPACISSGKPITQPTNNIWICTTCHHCAAPTEISRHRTCPLCHSLIVS 1200
WD40-rpts                                                                                      

Query     1201 MTVEI 1205
WD40-rpts           

11 WD40-repeats found in QUERY=FBpp0072679 (Len=1205):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-42       5.03  322.36  0.00281       12.5%     51.48
  WD 2:  Seg  5    62-100      6.55  385.07  0.00040       32.5%     45.10
  WD 3:  Seg  8   101-144      5.49  341.24  0.00157       32.5%     50.90
  WD 4:  Seg 12   147-185      6.26  373.12  0.00058       20.0%     54.30
  WD 5:  Seg 18   217-255      3.54  261.07  0.01872       10.0%     38.46
  WD 6:  Seg 22   256-296      4.02  280.68  0.01023       12.5%     38.02
  WD 7:  Seg 25   300-337      5.28  332.76  0.00204       25.0%     56.76
  WD 8:  Seg 32   373-411      3.45  257.33  0.02100       12.5%     41.78
  WD 9:  Seg 40   473-512      3.35  252.85  0.02410       15.0%     26.27
  WD10:  Seg 45   550-590      4.24  289.91  0.00769       15.0%     53.85
  WD11:  Seg 49   591-634      3.25  248.86  0.02723       17.5%     47.21

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-42     MF-V----YL--SKKIAIPNNVKLNCIAWNKEEGYIAVAGTDGLLKVLK
   WD 2   62-100    -L-S----MN----QTLDGHKESVRVVTWNDAQQKLTSSDTDGVIMVWM
   WD 3  101-144    LY-K----GSWYEEMTNDRKKSTVASMSWTSDGSRICIVYEDGAIIVGS
   WD 4  147-185    -G-N----RI----FGKELKGTHLTGVQWSPDNRLILFALANGECHLYD
   WD 5  217-255    -W-F----SG----RVVQSRKRPVLAICYENGRVQIMRNENDDAPAIFD
   WD 6  256-296    TGMR----NV----DAKWNHDGTVLAICGTTLDAVSPTSQRDTNQVCFY
   WD 7  300-337    -G-K----IY----RTLKVPGTDITSLSWEGKSLRIAMAV-DSFIYFAN
   WD 8  373-411    T--V----SN----QSFLKEVEPTLCLASSSEHCVLGVECVSSNIKEIA
   WD 9  473-512    TP-K----SA----STLHNVKARKEKRFHIDDTPTGVEMAKDLMLSSSS
   WD10  550-590    IA-N---VAL----RNRHLMNAKVYKMAINCNSTRAAIIDHMGVMTLLD
   WD11  591-634    LD-DNRETQL----NFSRVERKDVWAVSWATDNPLLLALMEKTRMYIFR

   WD40 Template    TG-E----CL----RTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD