Input parameters:

  Query = FBpp0072685 (Len=685)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0072685, Len=685):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSRPLRKDYRTADFEQLSRMIRDHPLMKEPGAEQQQLHKLRTPEYRTKCVMRASLDDIALGINLYKLQLDTPMSPTLEEP 80  
WD40-rpts                                                                                      

Query       81 NYLKEPASSARSAHSARPPATPFIKVLLRKTPIVVLFERRSMTALADTEEGRQVMEDNRKYDELLSGTDKTRRTVDADTQ 160 
WD40-rpts                                                                                      

Query      161 TMTALMKSRLVNTERLTTAQMGSYVSNFEMYDTYTDLEKSTTSVQVQGAKKMEITTYHVGGVDQFVGINCLPGFRLALML 240 
WD40-rpts                                                                                      

Query      241 TMRILASNVFEPQQRRYRNMAPPDPLAEDVKFKYRLGLLWRLSPPSSDPKVHQAVSDMSFCPSNGDIMAVAYGVYSHGKV 320 
WD40-rpts                                                                                      

Query      321 SKLPRSGWVYVWNIKNPVNPERRYHYQVPVVTVEFSPTQPQLLAIGLHNGGVEVRDISGQDLPPLAVSQRLSSPYFEPVT 400 
WD40-rpts                   (___________________WD 1__________________)           (____________

Query      401 AIKWIYFEGDVGCRNPHITPFLATSQAGAVTKYRLINSPNMLGLEQQRLQRAEGELEGIPIERQPPAASLLANRHPQCLE 480 
WD40-rpts      _________WD 2____________________)                                              

Query      481 IVLDPVQSDIYYVLTDEGTLYKCSTNYPLQHLELRQVHDGPAACMEFSPWSPRMYLTCGSDWCIRIWLAGILLPIVTLQH 560 
WD40-rpts                    (________________________WD 3________________________)(___________

Query      561 HLSPVHCARWSRTHSTILVSLSRSTVDIWDLRNSTMKPVSSTVIDADIFYTTFKFTHCGRSLAVGNEAGNLLMLSFEDMP 640 
WD40-rpts      _______WD 4__________________)(____________________WD 5___________________)     

Query      641 FPPHFQYKQLKRAIFKALSMQPDLRKQVKSVGYFGYPGGTKQTRA 685 
WD40-rpts                                                   

5 WD40-repeats found in QUERY=FBpp0072685 (Len=685):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   334-376      3.93  277.10  0.01143       25.0%     44.32
  WD 2:  Seg 14   388-434      3.74  269.28  0.01454       17.5%     41.27
  WD 3:  Seg 20   495-548      4.82  313.80  0.00367       25.0%     47.11
  WD 4:  Seg 24   549-590      5.53  343.24  0.00147       25.0%     55.19
  WD 5:  Seg 28   591-635      4.15  286.03  0.00867       20.0%     55.75

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  334-376    IK--N-------------PVNPERRYHYQVPVVTVEF----------SPTQPQLLAIGLHNGGVEVRD
   WD 2  388-434    SQ------------------R--LSSPYFEPVTAIKWIYFEGDVGCRNP-HITPFLATSQAGAVTKYR
   WD 3  495-548    TD--EGTLYKCSTNYPLQHLE--LRQVHDGPAACMEF----------SPWSPRMYLTCGSDWCIRIWL
   WD 4  549-590    AGILL-------------PIV--TLQHHLSPVHCARW----------SR-THSTILVSLSRSTVDIWD
   WD 5  591-635    LR--N--------STMKPVSS--TVIDADIFYTTFKF----------TH-CGRSLAVGNEAGNLLMLS

   WD40 Template    TG--E-------------CLR--TLSGHTSGVTSVSF----------SP-DGKRLVSGSEDGTIKVWD