WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: FBpp0072752 [Drosophila melanogaster] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = FBpp0072752 (Len=1772) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (FBpp0072752, Len=1772): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MQLKYLRTLLEGQEQIQRIAGLAWSPNQQRLAIATADRHILLYDDAGERRDKFSTKPANPANGKNSYVIRGLAFSPDSTK 80
WD40-rpts (_______________WD 1______________) (_________________WD 2____
Query 81 LAVGQSDSIVYVYKLGESWNDKKVICNKFPQASAVTALIWLTSGSIIAGKSPFPNEMNIFHQVFTTGLEDGKVRALHSKS 160
WD40-rpts _____________)(_____________________________WD 3____________________________) (
Query 161 NKSQSLYGGDSICISLAANTKGTGFLSGHNDGTIIRYFMTDEATEPLGRVVQHPVPPFALAWPQGGFCAGGCDQRIVFYD 240
WD40-rpts _________________WD 4________________) (________________WD 5_______________)
Query 241 SMGRQLRTFDHSRTEGEREFTVAACSPNGQAVAFGSFDRIRIFAWSPRQGAWSESATKEVACLYTLSSLLWRRDGARLAL 320
WD40-rpts (_________________WD 6_________________) (_________________WD 7______
Query 321 GSVSGAVLLFESVLRRTVWQDKFELIFVAPSQLLVRSLTEPSQALTIESQLGLEIDDVRIMGRDNYLVARTEESLILCDL 400
WD40-rpts __________)
Query 401 TRNLSSEVPWTASGHHERFYFENPTVCLIFNVGELSLVEYGENSILGSVRTEFVNPHVISVRLNERGNAKENKKLAFLLD 480
WD40-rpts (_________________WD 8_________________)(________________WD 9_________
Query 481 AKTICVVDLISRMTSGQISHETKIDWLELSETAHKLLFRDKKLRLILVDNYTGKKQTLLSNISFVQWVPQSDVVVAQSNS 560
WD40-rpts _______) (_________________WD10________________)
Query 561 NLAIWYNIDLPEHVTMQSVRGEAIEVLRENGRTVVRSQDGPSEHNYQLDEGLVEFGTAVNDSDFGRAVHFLESLGDKPAA 640
WD40-rpts
Query 641 KAMWHNLALIALEDGNLRVAQRCYAALGNVSKAYYLAGMIQQADEFEESSGSPGILCPEVRAKLALLGSDLRTAERIYLE 720
WD40-rpts
Query 721 QGDIESALKMYQQLGMWDEAVALAERRGYNRIAELKQQHMDYLLSSEQQEKAGQVLEEQGDLQQAMSLYMKANKPARAAR 800
WD40-rpts
Query 801 LALKTPHILQDEQVMLQVTEGLVRSELYELAGDIAHRLSRPEAALALYRKGGAYARALEIGRVVAPQEVTALEEEWGDWL 880
WD40-rpts
Query 881 VSRKQLDASINHYIEAGATQKALEAAVGAKQWRKAVQIAKVLDEPELIQRYAVDLAKHLAFAGDLDGAEDMLVRANLHKD 960
WD40-rpts
Query 961 AIELLNRHGKWERAYLIGEKHLKAEQVRELFVQLAGTLEEQGKFRDAEKVLIAVNEPDLAIAMYKRRELYDSMIRLVERY 1040
WD40-rpts
Query 1041 HKDLLDSTHLHLARQLESRGKLKNAEMHFVASGDWKSAVHMYCSSGRWEDGYRVAKLKGTEGASQQVAYMWAKSMPTEGA 1120
WD40-rpts
Query 1121 VRLLSKLGLLDTAVGFACDSGQFEFAMELCKFAGKPTDEVHLKIAMSLEDEGKFEAAEAEFLKANKPREAILMYQHAGDW 1200
WD40-rpts
Query 1201 QAALNVAENHLPDAVGEVLIGQASAALETSNYKDYEALLLRAHRPDLIIEHYKQESLYEDALRIAEEHYPSALNDLRRLQ 1280
WD40-rpts
Query 1281 AQLQRGQAQAQAGEDAASISRSYLQKAAEFAKKEQFRKAAECLMQIDSSNAEDASTLERALLRAAEICNQFLEGQDAQEL 1360
WD40-rpts
Query 1361 AQSLGPRLLAIKQIGPAAQLYLAADMPKQAVDVFIKTEQWSKARRLAKEIDPDLQLLAYVEQQQKASLKHEGNIEQLADI 1440
WD40-rpts
Query 1441 DIVSALDLLAEHGEWQRCLEKAKGLNPALLQKYVAVYAAQLIREGNCTTALGLYLSYGAPPIEAHFNIYTRIALDCLALR 1520
WD40-rpts
Query 1521 EEQTERGTTWRQLRDFLFRLLQSLKATPAQSQTKFAASMEQFLLIAHYYATRAACKEVQALQPVALRLSLALLRHTDLLP 1600
WD40-rpts
Query 1601 VDKGFYEAGMDLRQAGREAEAFVMLNHYLDVCEAIEEGSGQLVDHSDLASTDFPSSVPLPEDIHLKNDPSLHEEVREWVL 1680
WD40-rpts
Query 1681 AVSMDQQVDQQLPTDDRGLYESSLGPNDLPCMLSGFPVRGRQPVTFQGSSNQVNRDVWSKFSVALKMSPGSGIADIISFT 1760
WD40-rpts
Query 1761 EKWQGAANYVMH 1772
WD40-rpts
 10 WD40-repeats found in QUERY=FBpp0072752 (Len=1772): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 10-44 5.09 325.05 0.00259 17.5% 43.89 WD 2: Seg 4 55-94 5.54 343.48 0.00146 25.0% 43.04 WD 3: Seg 7 95-157 4.04 281.75 0.00990 25.0% 43.43 WD 4: Seg 11 160-198 6.47 382.03 0.00044 27.5% 51.05 WD 5: Seg 15 204-240 4.12 284.86 0.00899 20.0% 40.59 WD 6: Seg 18 247-286 3.88 274.88 0.01223 22.5% 41.66 WD 7: Seg 22 293-331 5.73 351.43 0.00114 22.5% 46.85 WD 8: Seg 33 411-450 3.27 249.57 0.02665 12.5% 37.54 WD 9: Seg 37 451-488 3.73 268.78 0.01477 17.5% 41.94 WD10: Seg 40 491-529 4.19 287.79 0.00821 10.0% 52.82Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 10-44 -----------LEGQEQIQR-IAGLAWSPNQQRLAI-----------------ATADRH-ILLYD WD 2 55-94 -TK------PANPANGKNSYVIRGLAFSPDSTKLAV-----------------GQSDSI-VYVYK WD 3 95-157 LGESWNDKKVICNKFPQASA-VTALIWLTSGSIIAGKSPFPNEMNIFHQVFTTGLEDGK-VRALH WD 4 160-198 -SN------KSQSLYGGDSI-CISLAANTKGTGFLS-----------------GHNDGT-IIRYF WD 5 204-240 -TE------PLGRVVQHPVP-PFALAWPQGG--FCA-----------------GGCDQR-IVFYD WD 6 247-286 -RT------FDHSRTEGERE-FTVAACSPNGQAVAF-----------------GSFDRIRIFAWS WD 7 293-331 -SE------SATKEVACLYT-LSSLLWRRDGARLAL-----------------GSVSGA-VLLFE WD 8 411-450 TAS------GHHERFYFENP-TVCLIFNVGELSLVE-----------------YGENSI-LGSVR WD 9 451-488 TEF------VNPHV--ISVR-LNERGNAKENKKLAF-----------------LLDAKT-ICVVD WD10 491-529 -SR------MTSGQISHETK-IDWLELSETAHKLLF-----------------RDKKLR-LILVD WD40 Template TGE------CLRTLSGHTSG-VTSVSFSPDGKRLVS-----------------GSEDGT-IKVWD |
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