Input parameters:

  Query = FBpp0073080 (Len=878)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0073080, Len=878):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRLKLEPQLYPNKHENAANLRDNATSAYDTKEISEFDSTIKNAVVRDFLADDESSQLEEELRQLIDTQAQQDVALEKLVM 80  
WD40-rpts                                                                                      

Query       81 SQDCELITLMTKVKGRIEVNQSVFTFVDLSPPTEDGSKYDFRFSTNKIREVHLRKYNLRRSALEIFLVDQTSYFLNFTTK 160 
WD40-rpts                                                                                      

Query      161 TRNKVFTKIVGLPLPNILYGSGRSPAELLRASGLTQRWINREISNFEYLMYLNTIAGRSYNDLSQYPVFPWILADYTSDV 240 
WD40-rpts                                                                                      

Query      241 LDLTDPKSFRDLSKPIGCINPKNEAEVRGKYDSFEDPSGAIPKFHYGTHYSNSAGVLHYLLRVEPFTSLHIDLQSGRFDV 320 
WD40-rpts                                                                                      

Query      321 ADRQFHSIPQTWKLLMDNPNDVKELIPEFFYFPEFLKNMNKFDLGHLQITKEKVDDVILPAWATTPEEFIAIHRRALESE 400 
WD40-rpts                                                                                      

Query      401 YVSQHLHHWIDLIFGYKQKGPKAAEALNVFYYCSYEGAVDLDKITNPVEREAVEGMINNFGQVPSQLLREPHPRRLTQDE 480 
WD40-rpts                                                                                      

Query      481 TALKLVRAELRRPDLTQFLDKVVQYYCELSTPKDPIVYLSPPRSPPRSFLQLSPDVLVSISKSTILGCNSWLSFDKDQGF 560 
WD40-rpts                                                                                      

Query      561 LLEIDATTANLKNRKRIFGPFHSSQQPHSQLFAVSTDGKLLYAGGIWDNSLRVYNLNKGKAVASVTRHLDIITCIALDNC 640 
WD40-rpts                                                                (_________________WD 1

Query      641 GSYLVTGSRDCTCIVWSIQTNQQGGGSTNNIPVHALTGQSHLQAITQLNTQNSYSPKPLTVLYGHDDAISSVAIYTELDL 720 
WD40-rpts      ________________)                                      (_________________WD 2___

Query      721 VVSGSLDGTVNVYTLQEGQFVRTLKPIGCTESCVQISFVTLSYHGHIAFSALDDTSHSVHVYSINGCSLGSKYVSGRVTG 800 
WD40-rpts      _____________)                                                 (________________

Query      801 LASASDYLVVADDAGDITMSRLHGLKPVFDIPLHVPIQTVVVTPGNTHILAPLRDGRLAVIAVQLPSGGNKKHSVLNV 878 
WD40-rpts      _WD 3_________________)(_________________WD 4________________)                

4 WD40-repeats found in QUERY=FBpp0073080 (Len=878):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 16   619-657      6.85  397.60  0.00027       30.0%     56.55
  WD 2:  Seg 22   696-734      6.19  370.46  0.00063       35.0%     53.02
  WD 3:  Seg 30   784-823      3.13  244.07  0.03153       15.0%     31.93
  WD 4:  Seg 34   824-862      4.85  315.05  0.00353       15.0%     57.70

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  619-657    -GKAVASVTRHLDIITCIALDNCGSYLVTGSRDCTCIVWS
   WD 2  696-734    -PKPLTVLYGHDDAISSVAIYTELDLVVSGSLDGTVNVYT
   WD 3  784-823    INGCSLGSKYVSGRVTGLASASDYLVVADDAGDITMSRLH
   WD 4  824-862    GLKPVFDIPLHVP-IQTVVVTPGNTHILAPLRDGRLAVIA

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD