Input parameters:

  Query = FBpp0073101 (Len=1326)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0073101, Len=1326):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MERGCPAASSESVTSAGERTQSAVTSSTSTWVKSQASTSRKTEASEESGLGAVDAEVGAGREAFVSMSTLREDVEDVCVS 80  
WD40-rpts                                                                                      

Query       81 SNSQHGFAVVLDDESSTFEISSSNSLPTSAGAASTVGVVAVDDSSSTDTLNGGHPDLGHPASSEHSRQGFFNEDNEDPPV 160 
WD40-rpts                                                                                      

Query      161 VCLINDDDDDEEPEPEEDDEEELIEDEDEDAVDIVTGAISCPNTSQLALADGTIMAADGSKIFLETPVVEEAQPHPGQVV 240 
WD40-rpts                                                                                      

Query      241 TTGSQSELTGKPKRLSDEFLLGEEDQAENLALGRCIKSEPVNPVDDNPSEGDDGATCFSLHDRLMSVRLKQMSLTANTVS 320 
WD40-rpts                                                                                      

Query      321 NPSPAASANAAAPEEASTSNSSSTSSSALSRADIESMDLIERRDFETEQRLTGGIILRTSSMVSQNKLNLSLIKSMAGGS 400 
WD40-rpts                                                                                      

Query      401 KAANGSGTANSDDWPSSSNGRTVSSDSKYTYKDLSTTPTSSRKYTNSRLSKSTAKLNLGSSLGASSCSQHRSGSSSTSKS 480 
WD40-rpts                                                                                      

Query      481 MESSTSCTGAARTDVYTNTNSNDYPSLAPTTSGSSTSGGSCQQDQEENVSASVSYSSVGSQTSQESGCSRTTAINPTAAC 560 
WD40-rpts                                                                                      

Query      561 STGSACLGDSQASTSASTSSGAGASNRCQYATTSTTKAARQVNASAQTQERFLTRSNPPAASGAGSVGANPTASVRQRRN 640 
WD40-rpts                                                                                      

Query      641 GSSDVVHLEVVVEEGAGGGDGGVVEPGDFSAEEPWANCDEENNCSDLEEICTCQNGNGSSYGGSNASLSETFDMDAMDPD 720 
WD40-rpts                                                                                      

Query      721 EPISLSLSSASAGFTEYSLTNPSSLMSHQRKRKFNEGRLLDGGDYSVTISSSGEVGGPGSGVSDNCRKRIAYDFASTPRS 800 
WD40-rpts                                                                                      

Query      801 SQHLGPTAVLSVTPSSHLTSSTPGSALGRRTPRSVPSRDNPPPELQHWLAQFQRWSHVERLLALDRLIDHCDPSQVRHMM 880 
WD40-rpts                                                                                      

Query      881 KVIEPQFQRDFISLLPRELALFVLSYLEPKDLLRAAQTCRSWRFLCDDNLLWKEKCRKAQILAEPRSDRPKRGRDGNMPP 960 
WD40-rpts                                                                                      

Query      961 IASPWKAAYMRQHIIEMNWRSRPVRKPKVLKGHDDHVITCLQFSGNRIVSGSDDNTLKVWSAVNGKCLRTLVGHTGGVWS 1040
WD40-rpts                             (________________WD 1________________)   (_______________

Query     1041 SQMSGNIIISGSTDRTLKVWDMDSGACVHTLQGHTSTVRCMHLHGSKVVSGSRDATLRVWDIEQGSCLHVLVGHLAAVRC 1120
WD40-rpts      _WD 2_______________)   (________________WD 3_______________)   (_______________

Query     1121 VQYDGKLIVSGAYDYMVKIWHPERQECLHTLQGHTNRVYSLQFDGLHVVSGSLDTSIRVWDVETGNCKHTLMGHQSLTSG 1200
WD40-rpts      _WD 4_______________)   (________________WD 5_______________)   (_______________

Query     1201 MELRQNILVSGNADSTVKVWDITTGQCLQTLSGPNKHHSAVTCLQFNSRFVVTSSDDGTVKLWDVKTGDFIRNLVALDSG 1280
WD40-rpts      _WD 6_______________)   (_________________WD 7_________________)   (____________

Query     1281 GSGGVVWRIRANDTKLICAVGSRNGTEETKLMVLDFDVEGACVKCS 1326
WD40-rpts      _________WD 8_____________________)           

8 WD40-repeats found in QUERY=FBpp0073101 (Len=1326):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 12   984-1021     7.07  406.53  0.00021       37.5%     46.63
  WD 2:  Seg 16  1025-1061     9.70  515.35  7.0e-06       57.5%     52.89
  WD 3:  Seg 20  1065-1101     9.12  491.58  1.5e-05       47.5%     50.24
  WD 4:  Seg 24  1105-1141     8.39  461.30  3.8e-05       42.5%     52.35
  WD 5:  Seg 28  1145-1181     9.31  499.34  1.2e-05       55.0%     52.38
  WD 6:  Seg 32  1185-1221     8.23  454.75  4.6e-05       42.5%     52.16
  WD 7:  Seg 36  1225-1264     7.74  434.48  8.7e-05       40.0%     50.71
  WD 8:  Seg 40  1268-1315     3.52  260.20  0.01923       27.5%     52.54

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  984-1021   VRKPKVL-----KGHDDHVITC--LQFSGNRIVSGSDDNT----LKVWS
   WD 2 1025-1061   GKCLRTL-----VGHTGGVWSSQ-MS--GNIIISGSTDRT----LKVWD
   WD 3 1065-1101   GACVHTL-----QGHTSTVRCMH-L--HGSKVVSGSRDAT----LRVWD
   WD 4 1105-1141   GSCLHVL-----VGHLAAVRCVQ-Y--DGKLIVSGAYDYM----VKIWH
   WD 5 1145-1181   QECLHTL-----QGHTNRVYSLQ-F--DGLHVVSGSLDTS----IRVWD
   WD 6 1185-1221   GNCKHTL-----MGHQSLTSGME-LRQN--ILVSGNADST----VKVWD
   WD 7 1225-1264   GQCLQTL-----SGPNKHHSAVTCLQFNSRFVVTSSDDGT----VKLWD
   WD 8 1268-1315   GDFIRNLVALDSGGSGGVVWRIR-ANDTKLICAVGSRNGTEETKLMVLD

   WD40 Template    GECLRTL-----SGHTSGVTSVS-FSPDGKRLVSGSEDGT----IKVWD