Input parameters:
Query = FBpp0073103 (Len=1326)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (FBpp0073103, Len=1326):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MERGCPAASSESVTSAGERTQSAVTSSTSTWVKSQASTSRKTEASEESGLGAVDAEVGAGREAFVSMSTLREDVEDVCVS 80
WD40-rpts
Query 81 SNSQHGFAVVLDDESSTFEISSSNSLPTSAGAASTVGVVAVDDSSSTDTLNGGHPDLGHPASSEHSRQGFFNEDNEDPPV 160
WD40-rpts
Query 161 VCLINDDDDDEEPEPEEDDEEELIEDEDEDAVDIVTGAISCPNTSQLALADGTIMAADGSKIFLETPVVEEAQPHPGQVV 240
WD40-rpts
Query 241 TTGSQSELTGKPKRLSDEFLLGEEDQAENLALGRCIKSEPVNPVDDNPSEGDDGATCFSLHDRLMSVRLKQMSLTANTVS 320
WD40-rpts
Query 321 NPSPAASANAAAPEEASTSNSSSTSSSALSRADIESMDLIERRDFETEQRLTGGIILRTSSMVSQNKLNLSLIKSMAGGS 400
WD40-rpts
Query 401 KAANGSGTANSDDWPSSSNGRTVSSDSKYTYKDLSTTPTSSRKYTNSRLSKSTAKLNLGSSLGASSCSQHRSGSSSTSKS 480
WD40-rpts
Query 481 MESSTSCTGAARTDVYTNTNSNDYPSLAPTTSGSSTSGGSCQQDQEENVSASVSYSSVGSQTSQESGCSRTTAINPTAAC 560
WD40-rpts
Query 561 STGSACLGDSQASTSASTSSGAGASNRCQYATTSTTKAARQVNASAQTQERFLTRSNPPAASGAGSVGANPTASVRQRRN 640
WD40-rpts
Query 641 GSSDVVHLEVVVEEGAGGGDGGVVEPGDFSAEEPWANCDEENNCSDLEEICTCQNGNGSSYGGSNASLSETFDMDAMDPD 720
WD40-rpts
Query 721 EPISLSLSSASAGFTEYSLTNPSSLMSHQRKRKFNEGRLLDGGDYSVTISSSGEVGGPGSGVSDNCRKRIAYDFASTPRS 800
WD40-rpts
Query 801 SQHLGPTAVLSVTPSSHLTSSTPGSALGRRTPRSVPSRDNPPPELQHWLAQFQRWSHVERLLALDRLIDHCDPSQVRHMM 880
WD40-rpts
Query 881 KVIEPQFQRDFISLLPRELALFVLSYLEPKDLLRAAQTCRSWRFLCDDNLLWKEKCRKAQILAEPRSDRPKRGRDGNMPP 960
WD40-rpts
Query 961 IASPWKAAYMRQHIIEMNWRSRPVRKPKVLKGHDDHVITCLQFSGNRIVSGSDDNTLKVWSAVNGKCLRTLVGHTGGVWS 1040
WD40-rpts (________________WD 1________________) (_______________
Query 1041 SQMSGNIIISGSTDRTLKVWDMDSGACVHTLQGHTSTVRCMHLHGSKVVSGSRDATLRVWDIEQGSCLHVLVGHLAAVRC 1120
WD40-rpts _WD 2_______________) (________________WD 3_______________) (_______________
Query 1121 VQYDGKLIVSGAYDYMVKIWHPERQECLHTLQGHTNRVYSLQFDGLHVVSGSLDTSIRVWDVETGNCKHTLMGHQSLTSG 1200
WD40-rpts _WD 4_______________) (________________WD 5_______________) (_______________
Query 1201 MELRQNILVSGNADSTVKVWDITTGQCLQTLSGPNKHHSAVTCLQFNSRFVVTSSDDGTVKLWDVKTGDFIRNLVALDSG 1280
WD40-rpts _WD 6_______________) (_________________WD 7_________________) (____________
Query 1281 GSGGVVWRIRANDTKLICAVGSRNGTEETKLMVLDFDVEGACVKCS 1326
WD40-rpts _________WD 8_____________________)
8 WD40-repeats found in QUERY=FBpp0073103 (Len=1326):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 12 984-1021 7.07 406.53 0.00021 37.5% 46.63
WD 2: Seg 16 1025-1061 9.70 515.35 7.0e-06 57.5% 52.89
WD 3: Seg 20 1065-1101 9.12 491.58 1.5e-05 47.5% 50.24
WD 4: Seg 24 1105-1141 8.39 461.30 3.8e-05 42.5% 52.35
WD 5: Seg 28 1145-1181 9.31 499.34 1.2e-05 55.0% 52.38
WD 6: Seg 32 1185-1221 8.23 454.75 4.6e-05 42.5% 52.16
WD 7: Seg 36 1225-1264 7.74 434.48 8.7e-05 40.0% 50.71
WD 8: Seg 40 1268-1315 3.52 260.20 0.01923 27.5% 52.54
Multiple sequence alignment of 8 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 984-1021 VRKPKVL-----KGHDDHVITC--LQFSGNRIVSGSDDNT----LKVWS
WD 2 1025-1061 GKCLRTL-----VGHTGGVWSSQ-MS--GNIIISGSTDRT----LKVWD
WD 3 1065-1101 GACVHTL-----QGHTSTVRCMH-L--HGSKVVSGSRDAT----LRVWD
WD 4 1105-1141 GSCLHVL-----VGHLAAVRCVQ-Y--DGKLIVSGAYDYM----VKIWH
WD 5 1145-1181 QECLHTL-----QGHTNRVYSLQ-F--DGLHVVSGSLDTS----IRVWD
WD 6 1185-1221 GNCKHTL-----MGHQSLTSGME-LRQN--ILVSGNADST----VKVWD
WD 7 1225-1264 GQCLQTL-----SGPNKHHSAVTCLQFNSRFVVTSSDDGT----VKLWD
WD 8 1268-1315 GDFIRNLVALDSGGSGGVVWRIR-ANDTKLICAVGSRNGTEETKLMVLD
WD40 Template GECLRTL-----SGHTSGVTSVS-FSPDGKRLVSGSEDGT----IKVWD