Input parameters:

  Query = FBpp0073509 (Len=1173)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0073509, Len=1173):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKKFTFKGVLDGFRQSVQPQATRQEQEIQEQLKADHFTLKKTFRHGFPYSPTSFAFDPVQKLLAIGDKSGYIRILGRPGV 80  
WD40-rpts                                    (____________________WD 1____________________)____

Query       81 DAHAKHEGESECAVLFAQFLVNEGALVTVTADDTIHLWSIRQKTPRIVQSLKFQRERVTCIHLPVGSKWLYVGTEKGNIH 160 
WD40-rpts      _______________WD 2___________________)     (_________________WD 3______________

Query      161 VVHIDTFALSGYIINWNKAIEVVRTSHPGAVIALCDNPLDANKLLIAFECGLLVLWDLKAKCAELRWQAAEAVKSLAWHY 240 
WD40-rpts      __)                   (_______________WD 4______________)  (_________________WD 

Query      241 EGKYFVSSHTDGSICSWPTKPQAKPQSQVCPHAKINKDGNAEKCKPIYKVDLKSSATGETFTIFSGGMPSEKGSKSNCIT 320 
WD40-rpts      5________________)                                                              

Query      321 VMVGKATTVLEMEHAVCDFITLCENPWPCETQEPYAIAVLLQYDLVLIDLLTPGFPCFESPYPMDLHESPVTCCTYLTDC 400 
WD40-rpts                                                                                      

Query      401 PSDLVPAFYSVGRTTTSKKSCFSEREWPISGGEWSPASCSYSEIVITGHQDGSLKFWDSGAGTLQILYKLKTAKMFEKPR 480 
WD40-rpts                         (_________________WD 6________________)            (_________

Query      481 SHVAHSHPESDNPLAVHLIFLCSESRRLCVAGAMGQVMLFKFRKVESTSEVLVLEIPILYENFDDIYGTSPECDFLTGHQ 560 
WD40-rpts      ______________WD 7______________________)                                       

Query      561 VQKAESSDSDKTAECSLKVRNGAQRKPPGFQSQLVCLTTGPNRRNVQVTSLCISSSYGLMAYGTEYGLVIIDIIQKICLL 640 
WD40-rpts                          (________________________WD 8_______________________)       

Query      641 SVACPDLYGAHDPYSRTPKSPKRIENKEEQSRSPSSDQVNKLDGTFSRSRSSSMSSIDMSSSESVTCLAFIESYAKRNDI 720 
WD40-rpts                                                                                      

Query      721 LTLVPTLWIGTSFGSILTLFITMPERDVRKSQPVLITINGGPVVRLKGSITSMSFLDSYGSIIPYTFETWRDEKRDNKDR 800 
WD40-rpts                                                                                      

Query      801 TPTKSSSRTSPTFTPTTANTLSNTSVAGGASAGGGAGGGGGAGGGAASGGAAAGGPAGGGAGAGSAAGAAGGVGSGVTSG 880 
WD40-rpts                                                                                      

Query      881 GGMSSSSASSSGISGSVSTGLETLTDRQYIVIASEKQTKVFDVANQCCINRIQLSEMDFAVKAETITMKDGSCLATYLSN 960 
WD40-rpts                                                                                      

Query      961 GHLMVHSLPSLKLLLDTDFLPLMELSFQTKCKQGIVDPMLSIWGQQIIVHEDTTQISKIFCFSHKGHGLYMASPTEIQKF 1040
WD40-rpts                                                                                      

Query     1041 TISSEFCQFILEMMGELYTVHEMPEQPKEGFFKGLFGGGAKLLDREELFGEQSGKPNRSVARHIPGPNLEQLGQRASTAA 1120
WD40-rpts                                                                                      

Query     1121 SEISRAHQLAMERGEKLNLLEERAERMANTAQDFSGTAHQLMLKYKDKKWYQL 1173
WD40-rpts                                                           

8 WD40-repeats found in QUERY=FBpp0073509 (Len=1173):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    31-76       5.25  331.57  0.00212       25.0%     39.91
  WD 2:  Seg  4    76-119      4.92  317.86  0.00324       22.5%     51.25
  WD 3:  Seg  8   125-163      5.43  338.79  0.00169       25.0%     51.07
  WD 4:  Seg 13   183-217      4.18  287.41  0.00831       22.5%     36.35
  WD 5:  Seg 16   220-258      6.09  366.11  0.00072       27.5%     45.98
  WD 6:  Seg 29   420-458      5.04  322.65  0.00279       20.0%     14.37
  WD 7:  Seg 32   471-521      2.93  235.60  0.04082       12.5%     34.33
  WD 8:  Seg 36   581-633      2.85  232.46  0.04490       20.0%     35.36

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   31-76     QLKADHFTLKK-----------TF-------------RHGFPY----SPTSFAFDP-VQKLLAIGDKSGYIRILG
   WD 2   76-119    GRPG------V-----------DA-------------HAKHEGESECAVLFAQFLV-NEGALVTVTADDTIHLWS
   WD 3  125-163    -PRI------V-----------QS-------------LKFQRE----RVTCIHLPV-GSKWLYVGTEKGNIHVVH
   WD 4  183-217    -----------------------V-------------RTSHPG----AVIALCDNPLDANKLLIAFECGLLVLWD
   WD 5  220-258    -AKC------A-----------EL-------------RWQAAE----AVKSLAWHY-EGKYFVSSHTDGSICSWP
   WD 6  420-458    -SCF------S-----------ER-------------EWPISG----GEWSPASCS-YSEIVITGHQDGSLKFWD
   WD 7  471-521    KTAK------MFEKPRSHVAHSHP-------------ESDNPL----AVHLIFLCS-ESRRLCVAGAMGQVMLFK
   WD 8  581-633    NGAQ------R-----------KPPGFQSQLVCLTTGPNRRNV----QVTSLCISS-SYGLMAYGTEYGLVIIDI

   WD40 Template    TGEC------L-----------RT-------------LSGHTS----GVTSVSFSP-DGKRLVSGSEDGTIKVWD