Input parameters:
Query = FBpp0073510 (Len=1173)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (FBpp0073510, Len=1173):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKKFTFKGVLDGFRQSVQPQATRQEQEIQEQLKADHFTLKKTFRHGFPYSPTSFAFDPVQKLLAIGDKSGYIRILGRPGV 80
WD40-rpts (____________________WD 1____________________)____
Query 81 DAHAKHEGESECAVLFAQFLVNEGALVTVTADDTIHLWSIRQKTPRIVQSLKFQRERVTCIHLPVGSKWLYVGTEKGNIH 160
WD40-rpts _______________WD 2___________________) (_________________WD 3______________
Query 161 VVHIDTFALSGYIINWNKAIEVVRTSHPGAVIALCDNPLDANKLLIAFECGLLVLWDLKAKCAELRWQAAEAVKSLAWHY 240
WD40-rpts __) (_______________WD 4______________) (_________________WD
Query 241 EGKYFVSSHTDGSICSWPTKPQAKPQSQVCPHAKINKDGNAEKCKPIYKVDLKSSATGETFTIFSGGMPSEKGSKSNCIT 320
WD40-rpts 5________________)
Query 321 VMVGKATTVLEMEHAVCDFITLCENPWPCETQEPYAIAVLLQYDLVLIDLLTPGFPCFESPYPMDLHESPVTCCTYLTDC 400
WD40-rpts
Query 401 PSDLVPAFYSVGRTTTSKKSCFSEREWPISGGEWSPASCSYSEIVITGHQDGSLKFWDSGAGTLQILYKLKTAKMFEKPR 480
WD40-rpts (_________________WD 6________________) (_________
Query 481 SHVAHSHPESDNPLAVHLIFLCSESRRLCVAGAMGQVMLFKFRKVESTSEVLVLEIPILYENFDDIYGTSPECDFLTGHQ 560
WD40-rpts ______________WD 7______________________)
Query 561 VQKAESSDSDKTAECSLKVRNGAQRKPPGFQSQLVCLTTGPNRRNVQVTSLCISSSYGLMAYGTEYGLVIIDIIQKICLL 640
WD40-rpts (________________________WD 8_______________________)
Query 641 SVACPDLYGAHDPYSRTPKSPKRIENKEEQSRSPSSDQVNKLDGTFSRSRSSSMSSIDMSSSESVTCLAFIESYAKRNDI 720
WD40-rpts
Query 721 LTLVPTLWIGTSFGSILTLFITMPERDVRKSQPVLITINGGPVVRLKGSITSMSFLDSYGSIIPYTFETWRDEKRDNKDR 800
WD40-rpts
Query 801 TPTKSSSRTSPTFTPTTANTLSNTSVAGGASAGGGAGGGGGAGGGAASGGAAAGGPAGGGAGAGSAAGAAGGVGSGVTSG 880
WD40-rpts
Query 881 GGMSSSSASSSGISGSVSTGLETLTDRQYIVIASEKQTKVFDVANQCCINRIQLSEMDFAVKAETITMKDGSCLATYLSN 960
WD40-rpts
Query 961 GHLMVHSLPSLKLLLDTDFLPLMELSFQTKCKQGIVDPMLSIWGQQIIVHEDTTQISKIFCFSHKGHGLYMASPTEIQKF 1040
WD40-rpts
Query 1041 TISSEFCQFILEMMGELYTVHEMPEQPKEGFFKGLFGGGAKLLDREELFGEQSGKPNRSVARHIPGPNLEQLGQRASTAA 1120
WD40-rpts
Query 1121 SEISRAHQLAMERGEKLNLLEERAERMANTAQDFSGTAHQLMLKYKDKKWYQL 1173
WD40-rpts
8 WD40-repeats found in QUERY=FBpp0073510 (Len=1173):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 31-76 5.25 331.57 0.00212 25.0% 39.91
WD 2: Seg 4 76-119 4.92 317.86 0.00324 22.5% 51.25
WD 3: Seg 8 125-163 5.43 338.79 0.00169 25.0% 51.07
WD 4: Seg 13 183-217 4.18 287.41 0.00831 22.5% 36.35
WD 5: Seg 16 220-258 6.09 366.11 0.00072 27.5% 45.98
WD 6: Seg 29 420-458 5.04 322.65 0.00279 20.0% 14.37
WD 7: Seg 32 471-521 2.93 235.60 0.04082 12.5% 34.33
WD 8: Seg 36 581-633 2.85 232.46 0.04490 20.0% 35.36
Multiple sequence alignment of 8 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 31-76 QLKADHFTLKK-----------TF-------------RHGFPY----SPTSFAFDP-VQKLLAIGDKSGYIRILG
WD 2 76-119 GRPG------V-----------DA-------------HAKHEGESECAVLFAQFLV-NEGALVTVTADDTIHLWS
WD 3 125-163 -PRI------V-----------QS-------------LKFQRE----RVTCIHLPV-GSKWLYVGTEKGNIHVVH
WD 4 183-217 -----------------------V-------------RTSHPG----AVIALCDNPLDANKLLIAFECGLLVLWD
WD 5 220-258 -AKC------A-----------EL-------------RWQAAE----AVKSLAWHY-EGKYFVSSHTDGSICSWP
WD 6 420-458 -SCF------S-----------ER-------------EWPISG----GEWSPASCS-YSEIVITGHQDGSLKFWD
WD 7 471-521 KTAK------MFEKPRSHVAHSHP-------------ESDNPL----AVHLIFLCS-ESRRLCVAGAMGQVMLFK
WD 8 581-633 NGAQ------R-----------KPPGFQSQLVCLTTGPNRRNV----QVTSLCISS-SYGLMAYGTEYGLVIIDI
WD40 Template TGEC------L-----------RT-------------LSGHTS----GVTSVSFSP-DGKRLVSGSEDGTIKVWD