Input parameters:

  Query = FBpp0073511 (Len=1470)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0073511, Len=1470):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKKFTFKGVLDGFRQSVQPQATRQEQEIQEQLKADHFTLKKTFRHGFPYSPTSFAFDPVQKLLAIGDKSGYIRILGRPGV 80  
WD40-rpts                                     (____________________WD 1___________________)____

Query       81 DAHAKHEGESECAVLFAQFLVNEGALVTVTADDTIHLWSIRQKTPRIVQSLKFQRERVTCIHLPVGSKWLYVGTEKGNIH 160 
WD40-rpts      _______________WD 2___________________)     (_________________WD 3______________

Query      161 VVHIDTFALSGYIINWNKAIEVVRTSHPGAVIALCDNPLDANKLLIAFECGLLVLWDLKAKCAELRWQAAEAVKSLAWHY 240 
WD40-rpts      __)                   (_______________WD 4______________)  (_________________WD 

Query      241 EGKYFVSSHTDGSICSWPTKPQAKPQSQVCPHAKINKDGNAEKCKPIYKVDLKSSATGETFTIFSGGMPSEKGSKSNCIT 320 
WD40-rpts      5________________)                                                              

Query      321 VMVGKATTVLEMEHAVCDFITLCENPWPCETQEPYAIAVLLQYDLVLIDLLTPGFPCFESPYPMDLHESPVTCCTYLTDC 400 
WD40-rpts                                                                                      

Query      401 PSDLVPAFYSVGRTTTSKKSCFSEREWPISGGEWSPASCSYSEIVITGHQDGSLKFWDSGAGTLQILYKLKTAKMFEKPR 480 
WD40-rpts                 (_____________________WD 6____________________)             (________

Query      481 SHVAHSHPESDNPLAVHLIFLCSESRRLCVAGAMGQVMLFKFRKVESTSEVLVLEIPILYENFDDIYGTSPECDFLTGHQ 560 
WD40-rpts      ______________WD 7______________________)                                       

Query      561 VQKAESSDSDKTAECSLKVRNGAQRKPPGFQSQLVCLTTGPNRRNVQVTSLCISSSYGLMAYGTEYGLVIIDIIQKICLL 640 
WD40-rpts                                                                                      

Query      641 SVACPDLYGAHDPYSRTPKSPKRIENKEEQSRSPSSDQLNDTTSPDSPSLEFVPEAGETSAHDGVATATSSRPSSPDPVV 720 
WD40-rpts                                                                                      

Query      721 NSARETLLSGSAAATAAAAASAAVMMAKSPQRDDAAPKELQDRRKSMSWKTFNLKRQLSKVNMKIGGLNVNTDMESLKNS 800 
WD40-rpts                                                                                      

Query      801 SIFYTPKEVSPEAATPPATEEEATPEGKEDESLDDGEMATNAGAAAAASPSPAVRGKFRSSTTDSPDEGASSSIASGIRR 880 
WD40-rpts                                                                                      

Query      881 VDFEQPAGVEVERPNNLPLADAPAPLKPARQKFKEKSRDQRLLSVPNIKYQPRDSRGGARNLKNDVSPLMGGGGGGGGVV 960 
WD40-rpts                                                                                      

Query      961 GASSGIGGSVAGGKKIHKLDGTFSRSRSSSMSSIDMSSSESVTCLAFIESYAKRNDILTLVPTLWIGTSFGSILTLFITM 1040
WD40-rpts                                                                                      

Query     1041 PERDVRKSQPVLITINGGPVVRLKGSITSMSFLDSYGSIIPYTFETWRDEKRDNKDRTPTKSSSRTSPTFTPTTANTLSN 1120
WD40-rpts                                                                                      

Query     1121 TSVAGGASAGGGAGGGGGAGGGAASGGAAAGGPAGGGAGAGSAAGAAGGVGSGVTSGGGMSSSSASSSGISGSVSTGLET 1200
WD40-rpts                                                                                      

Query     1201 LTDRQYIVIASEKQTKVFDVANQCCINRIQLSEMDFAVKAETITMKDGSCLATYLSNGHLMVHSLPSLKLLLDTDFLPLM 1280
WD40-rpts                                                                                      

Query     1281 ELSFQTKCKQGIVDPMLSIWGQQIIVHEDTTQISKIFCFSHKGHGLYMASPTEIQKFTISSEFCQFILEMMGELYTVHEM 1360
WD40-rpts                                                                                      

Query     1361 PEQPKEGFFKGLFGGGAKLLDREELFGEQSGKPNRSVARHIPGPNLEQLGQRASTAASEISRAHQLAMERGEKLNLLEER 1440
WD40-rpts                                                                                      

Query     1441 AERMANTAQDFSGTAHQLMLKYKDKKWYQL 1470
WD40-rpts                                    

7 WD40-repeats found in QUERY=FBpp0073511 (Len=1470):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    32-76       5.34  335.42  0.00188       30.0%     37.08
  WD 2:  Seg  4    76-119      4.77  311.66  0.00392       22.5%     52.34
  WD 3:  Seg  8   125-163      5.24  331.11  0.00215       25.0%     49.61
  WD 4:  Seg 13   183-217      3.98  278.97  0.01078       22.5%     39.65
  WD 5:  Seg 16   220-258      5.89  357.81  0.00094       27.5%     48.23
  WD 6:  Seg 28   412-458      4.62  305.57  0.00474       22.5%     18.94
  WD 7:  Seg 31   472-521      3.24  248.47  0.02756       15.0%     37.87

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   32-76     LKADHFT----------LK--KTFRHGFPY----SPTSFAFDP-VQKLLAIGDKSGYIRILG
   WD 2   76-119    GRPGVDA----------HA-------KHEGESECAVLFAQFLV-NEGALVTVTADDTIHLWS
   WD 3  125-163    -PRIVQS----------LK-------FQRE----RVTCIHLPV-GSKWLYVGTEKGNIHVVH
   WD 4  183-217    ------V----------RT-------SHPG----AVIALCDNPLDANKLLIAFECGLLVLWD
   WD 5  220-258    -AKCAEL----------RW-------QAAE----AVKSLAWHY-EGKYFVSSHTDGSICSWP
   WD 6  412-458    GRTTTSK----------KSCFSEREWPISG----GEWSPASCS-YSEIVITGHQDGSLKFWD
   WD 7  472-521    TAKMFEKPRSHVAHSHPES-------DNPL----AVHLIFLCS-ESRRLCVAGAMGQVMLFK

   WD40 Template    TGECLRT----------LS-------GHTS----GVTSVSFSP-DGKRLVSGSEDGTIKVWD