Accession: FBpp0073835 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = FBpp0073835 (Len=443)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0073835, Len=443):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPPEMEIIVGTYEEVLLGFKLIKSPTDGLTDSVKFELKQTFADSSHAGSITSVAVQWPWVASGGTDDRIFVYDMRTRKQS 80  
WD40-rpts                                          (________________WD 1_______________)   (___

Query       81 QIILSHAGRVNTLKFTPDLSHLLSGSDDGHMIATRVGSWTKEGDWQKAHAGQAVTHISCHPSSKLALSLGGDQVLNTWNL 160 
WD40-rpts      ______________WD 2________________)(___________________WD 3___________________) 

Query      161 VNGRVAYKTNLKNKATLGLQPGCLSWSKQGDHFTLSGPLVLEIWGIENAHVMRRIEMPAKPICITWLDGNECLTGLDNGN 240 
WD40-rpts        (___________________WD 4__________________)   (________________WD 5___________

Query      241 IAWISLKDEDDTPPTFILAHEARVKAIAYLNELLATVSSAGEIKVWKIDMETRKLEEIASSFMDCRPTDLGLLDLRQFGN 320 
WD40-rpts      ____)     (________________WD 6_______________)         (_________________WD 7__

Query      321 VQPVEQRIKVEEKPKAKVESDQSAKPAAPRGFVTIEYEQDKNLDAEKKKGKGKKNKIQAKKAQQKAEESSEESNSSEEKE 400 
WD40-rpts      ______________)                                                                 

Query      401 SDDFSDSDSDVSSDHGHRKRKPMKRKQQPTPASKGKAKQQKKK 443 
WD40-rpts

7 WD40-repeats found in QUERY=FBpp0073835 (Len=443):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    37-73       5.96  360.68  0.00086       27.5%     54.34
  WD 2:  Seg  7    77-115      9.29  498.61  1.2e-05       27.5%     55.12
  WD 3:  Seg 11   116-159      6.96  402.22  0.00024       25.0%     52.43
  WD 4:  Seg 15   163-205      5.07  324.26  0.00265       15.0%     50.77
  WD 5:  Seg 19   209-245      5.36  336.26  0.00183       15.0%     52.29
  WD 6:  Seg 23   251-287      6.52  384.13  0.00041       22.5%     51.63
  WD 7:  Seg 26   297-335      4.89  316.63  0.00336        2.5%     15.57

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   37-73     -LKQTFA---DSSHAG-SIT-----SVAVQ--WPWVASGGTDDRIFVYD
   WD 2   77-115    -RKQSQI---ILSHAG-RVN-----TLKFTPDLSHLLSGSDDGHMIATR
   WD 3  116-159    VGSWTKEGDWQKAHAGQAVT-----HISCHPSSKLALSLGGDQVLNTWN
   WD 4  163-205    -GRVAYK---TNLKNK-ATLGLQPGCLSWSKQGDHFTL-SGPLVLEIWG
   WD 5  209-245    -AHVMRR---IEMPAK-PIC-----IT--WLDGNECLTGLDNGNIAWIS
   WD 6  251-287    -DTPPTF---ILAHEA-RVK-----AIAYL--NELLATVSSAGEIKVWK
   WD 7  297-335    -EIASSF---MDCRPT-DLG-----LLDLRQFGNVQPVEQRIKVEEKPK

   WD40 Template    TGECLRT---LSGHTS-GVT-----SVSFSPDGKRLVSGSEDGTIKVWD