Input parameters:

  Query = FBpp0073836 (Len=434)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0073836, Len=434):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPPEMEIIEATNEELLLGFKLIKSPTDGFTDSVKFELKQTFADSSYARSITSLAVQWPWVASGGTDGRIFVYDMRTRKQS 80  
WD40-rpts                                        (_________________WD 1________________)   (___

Query       81 QIILSHAGRVNTLKFTPDLSLLLSGSDDGHMIATRVGSWTKEYDWQKAHAGQAVTHVSCHPSSKLALSLGGDQVLNTWNL 160 
WD40-rpts      ______________WD 2________________)(___________________WD 3___________________) 

Query      161 VNGCVAHKTNLKNKATLDFQTGCLSWSKQGDHFTLSGPLVLEIWGIENAHVMRRIEMPSKPICITWLDGNECLTGLDNGN 240 
WD40-rpts        (___________________WD 4__________________)   (________________WD 5___________

Query      241 IAWISLKDEDDTPPTFILAHEVRVKAIAYLNEFLATVSIAGQIKVWKIDMETRKLEEIARSFMDCRPTDLGLLDLRQFGN 320 
WD40-rpts      ____)   (_________________WD 6________________)                                 

Query      321 VRPVEQRTKVEEKPKAKVESDQSAKPAAPRGFVTIEYEQDKKLDAEKKKEKKKNKKDEESSEESNSSEDKENDDFSDSDS 400 
WD40-rpts                                                                                      

Query      401 DVSSDHGHRKRKPMKREQQPTPASKGKAKQQKKK 434 
WD40-rpts                                        

6 WD40-repeats found in QUERY=FBpp0073836 (Len=434):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    35-73       8.03  446.48  6.0e-05       25.0%     52.20
  WD 2:  Seg  7    77-115      9.40  502.83  1.0e-05       27.5%     56.13
  WD 3:  Seg 11   116-159      7.50  424.38  0.00012       27.5%     58.41
  WD 4:  Seg 15   163-205      5.01  321.75  0.00287       15.0%     54.40
  WD 5:  Seg 19   209-245      6.24  372.41  0.00060       15.0%     52.91
  WD 6:  Seg 23   249-287      6.36  377.24  0.00051       20.0%     37.40

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   35-73     -F---ELKQTFADSS-YA-----RSITSLAVQWPWVASGGTDGRIFVYD
   WD 2   77-115    -R---KQSQIILSHA-GR-----VNTLKFTPDLSLLLSGSDDGHMIATR
   WD 3  116-159    VGSWTKEYDWQKAHAGQA-----VTHVSCHPSSKLALSLGGDQVLNTWN
   WD 4  163-205    -G---CVAHKTNLKN-KATLDFQTGCLSWSKQGDHFTL-SGPLVLEIWG
   WD 5  209-245    -A---HVMRRIEMPS-KP-----ICIT--WLDGNECLTGLDNGNIAWIS
   WD 6  249-287    -E---DDTPPTFILA-HE-----VRVKAIAYLNEFLATVSIAGQIKVWK

   WD40 Template    TG---ECLRTLSGHT-SG-----VTSVSFSPDGKRLVSGSEDGTIKVWD