Input parameters:
Query = FBpp0073921 (Len=340)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (FBpp0073921, Len=340):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MNELDSLRQEAESLKNAIRDARKAACDTSLLQAATSLEPIGRIQMRTRRTLRGHLAKIYAMHWGNDSRNLVSASQDGKLI 80
WD40-rpts (_________________WD 1______________
Query 81 VWDSHTTNKVHAIPLRSSWVMTCAYAPSGSYVACGGLDNMCSIYNLKTREGNVRVSRELPGHGGYLSCCRFLDDNQIVTS 160
WD40-rpts __) (_________________WD 2________________) (________________WD 3_______
Query 161 SGDMSCGLWDIETGLQVTSFLGHTGDVMALSLAPQCKTFVSGACDASAKLWDIREGVCKQTFPGHESDINAVTFFPNGQA 240
WD40-rpts _________) (_________________WD 4________________) (_________________WD 5___
Query 241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDTMKAERSGILAGHDNRVSCLGV 320
WD40-rpts _____________)(___________________WD 6___________________) (_________________W
Query 321 TENGMAVATGSWDSFLRVWN 340
WD40-rpts D 7________________)
7 WD40-repeats found in QUERY=FBpp0073921 (Len=340):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 45-83 9.97 526.50 5.0e-06 37.5% 50.93
WD 2: Seg 7 87-125 8.73 475.40 2.4e-05 15.0% 56.16
WD 3: Seg 11 133-170 7.38 419.38 0.00014 27.5% 49.63
WD 4: Seg 15 174-212 10.01 528.29 4.7e-06 37.5% 55.97
WD 5: Seg 19 216-254 10.45 546.30 2.7e-06 37.5% 53.00
WD 6: Seg 23 255-298 8.44 463.30 3.5e-05 32.5% 56.14
WD 7: Seg 27 302-340 9.73 516.48 6.8e-06 27.5% 48.73
Multiple sequence alignment of 7 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 45-83 -MR----TRRTLRGHLAKIYAMHWGNDSRNLVSASQDGKLIVWD
WD 2 87-125 -TN----KVHAIPLRSSWVMTCAYAPSGSYVACGGLDNMCSIYN
WD 3 133-170 -VR----VSRELPGHGGYLSCCRFLDDNQ-IVTSSGDMSCGLWD
WD 4 174-212 -GL----QVTSFLGHTGDVMALSLAPQCKTFVSGACDASAKLWD
WD 5 216-254 -GV----CKQTFPGHESDINAVTFFPNGQAFATGSDDATCRLFD
WD 6 255-298 IRADQELAMYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWD
WD 7 302-340 -AE----RSGILAGHDNRVSCLGVTENGMAVATGSWDSFLRVWN
WD40 Template TGE----CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD