Input parameters:

  Query = FBpp0075239 (Len=696)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0075239, Len=696):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTNNAKKEPQQRGKHQVHNVRFYTIKPREIVSLAYSKSSKCLALSRATPVIELWNLEHAPYLDRVIHLPTDSHVESIAWA 80  
WD40-rpts                     (_________________WD 1_________________)   (_________________WD 2

Query       81 GNRLFSVDLSGKLIEWDVIKLKQRYEHSPTGNALWSIDVNPAETDIAIGSEEGHINILSIENDEITYKSLFNKQKGRVLC 160 
WD40-rpts      ________________)   (_________________WD 3________________)(___________________W

Query      161 IKFDKTGTKLVTGTEGFVRIWNVLKGTTLHTMTLSEKNVIVWSLQVLSDNTIIAGDSAGFVTVWDADNATQIDSTRVLDK 240 
WD40-rpts      D 4__________________)(___________________WD 5__________________)   (___________

Query      241 NVFALAVNNKEDRLVCSGMQPPLIRIFSKTKIKREESTSERWIKFLQRDAHKHYVKSLLVIDDQIYSGGRDGILTITSSE 320 
WD40-rpts      ______WD 6_________________)(______________________WD 7______________________)(_

Query      321 RMQAHLSQHAPFLKGSVASMAISKKLLLLRYPNSVHLWRLGSVAPQGEDKKKPWALPVGHTEEQLLELPPQKLLQLNVKE 400 
WD40-rpts      _________________WD 8_________________)                                      (__

Query      401 HNFIQSAAISSDANWICYSTLKELRISRLKSDPLQVERLVDDLPEELQPASHIIFTKQGDLVLLNPQNNHLSWFTLEEDL 480 
WD40-rpts      _____________WD 9_______________)   (_________________WD10________________)(____

Query      481 VTFKYTIDLSEKCKNTISHVVISSHGEYIVAASSDHIISVWKLHGKQYKHLLNLPRHRAGTTALSMHEDYPRVVVAYANG 560 
WD40-rpts      _________________WD11____________________)     (_________________WD12___________

Query      561 QLVEYDLVNRIFTCETNEYLIPETRRHCINGISLDPQNRNIFIVHTEGNLYVLERDQHLDPKELVSNSKSKKLSNGNRSS 640 
WD40-rpts      _____)            (_______________WD13_______________)                          

Query      641 VDGGSKGLSLKTTLSRQHLVHVSRLSPNELVNVSISTNNLLAPLPPPYQRKKFGAS 696 
WD40-rpts                                                              

13 WD40-repeats found in QUERY=FBpp0075239 (Len=696):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    16-55       6.99  403.49  0.00023       17.5%     56.67
  WD 2:  Seg  5    59-97       7.53  425.71  0.00011       22.5%     54.41
  WD 3:  Seg  9   101-139      7.86  439.14  7.5e-05       20.0%     58.12
  WD 4:  Seg 13   140-182      6.74  392.95  0.00031       20.0%     51.43
  WD 5:  Seg 17   183-225      6.28  374.12  0.00056       27.5%     52.57
  WD 6:  Seg 21   229-268      6.44  380.55  0.00046       15.0%     54.91
  WD 7:  Seg 25   269-318      5.47  340.73  0.00159       22.5%     46.28
  WD 8:  Seg 29   319-359      6.63  388.63  0.00036       20.0%     43.61
  WD 9:  Seg 33   398-433      3.51  259.62  0.01957       10.0%     35.80
  WD10:  Seg 36   437-475      7.35  418.28  0.00014        7.5%     51.96
  WD11:  Seg 40   476-522      7.46  422.69  0.00013       25.0%     49.54
  WD12:  Seg 44   528-566      7.77  435.79  8.3e-05       27.5%     55.15
  WD13:  Seg 49   579-614      6.34  376.39  0.00053       10.0%     47.74

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   16-55     QVH-------NVR------------FYTIKPREI-VSLAYSKSSKCL-ALSRATPV----IELWN
   WD 2   59-97     -AP-------YLD------------RVIHLPTDS-HVESIAWAGNRL-FSVDLSGK----LIEWD
   WD 3  101-139    -LK-------QRY------------EHSPTGNAL-WSIDVNPAETDI-AIGSEEGH----INILS
   WD 4  140-182    IEN---DEITYKS------------LFNKQKGRV-LCIKFDKTGTKL-VTGT-EGF----VRIWN
   WD 5  183-225    VLK---GTTLHTM------------TLSEKNVIV-WSLQVLSDNT-I-IAGDSAGF----VTVWD
   WD 6  229-268    -AT-------QID------------STRVLDKNV-FALAVNNKEDRLVCSGMQPPL----IRIFS
   WD 7  269-318    KTK-------IKREESTSERWIKFLQRDAHKHYV-KSLLVIDDQ--I-YSGGRDGI----LTITS
   WD 8  319-359    SER-------MQA------------HLSQHAPFLKGSVASMAISKKL-LLLRYPNS----VHLWR
   WD 9  398-433    VK---------------------------EHNFI-QSAAISSDANWI-CYSTLKELRISRLKSDP
   WD10  437-475    -ER-------LVD------------DLPEELQPA-SHIIFTKQGDLV-LLNPQNNH----LSWFT
   WD11  476-522    LEEDLVTFKYTID------------LSEKCKNTI-SHVVISSHGEYI-VAASSDHI----ISVWK
   WD12  528-566    -YK-------HLL------------NLPRHRAGT-TALSMHEDYPRV-VVAYANGQ----LVEYD
   WD13  579-614    -----------YL------------IPETRRHCI-NGISLDPQNRNI-FIVHTEGN----LYVLE

   WD40 Template    TGE-------CLR------------TLSGHTSGV-TSVSFSPDGKRL-VSGSEDGT----IKVWD