Input parameters:

  Query = FBpp0075581 (Len=608)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0075581, Len=608):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAQPQPPAYENKNIYATLPRTQRGQPIVLGADPKGKNFLYTNGNSVIIRNIENPAIADVYTEHSCAVNVAKYSPSGFYIA 80  
WD40-rpts                  (________________WD 1________________)     (________________WD 2____

Query       81 SGDASGKIRIWDTVNKEHLLKNEFQPIAGPIKDISWSPDNQRIVAVGEGRERFGHVFMSETGTSVGEISGQSKSINSADF 160 
WD40-rpts      ___________)(____________________WD 3____________________)   (_________________W

Query      161 RPARPFRIVTGSEDNTIAVFEGPPFKFKMTKQDHSRFVQAVRYSPDGKFFASAGFDGKVFLYDGTSSELVGEFGSPAHKG 240 
WD40-rpts      D 4_________________)   (_________________WD 5________________)   (_____________

Query      241 GVYALAWKPDSTQLLTCSGDKTCRLWTVESRELVSEFVMGTTVDDQQVSCLWQGDNLITVSLSGVITYLNVADPSKPLRV 320 
WD40-rpts      _____WD 6_________________)(___________________WD 7__________________)    (_____

Query      321 VKGHNKPITVLGLSDDRSTIYTGSHDGVVTNWNSGSGTNDRITGTGHGNQINGIAAWGDFVYTCGIDDSLRQFSVEGNSY 400 
WD40-rpts      ____________WD 8________________)(__________________WD 9_________________)   (__

Query      401 TDYVVKLNCQPRGLAILRNENIIALACIKELTLVQDQKKIFSLPIKYEASSIAVNADTSDVAVGGDDQKLHIYTLKGGVL 480 
WD40-rpts      _______________WD10________________)(________________WD11________________)(_____

Query      481 EPKVELDHLGAVTDVSYSPDLKYLVACDAHRKVVLYSVEEYKPAHNKEWGFHSARVNTVAWSPNSLLVASGSLDTTIIIW 560 
WD40-rpts      ______________WD12__________________)(___________________WD13___________________

Query      561 SVANPAKHTIIKNAHPQSQITRLVWLDNNTVISTGQDCNTKVWHVENI 608 
WD40-rpts      )    (_________________WD14________________)    

14 WD40-repeats found in QUERY=FBpp0075581 (Len=608):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    13-50       4.54  302.19  0.00526        7.5%     42.18
  WD 2:  Seg  4    56-92       8.57  468.56  3.0e-05       27.5%     47.59
  WD 3:  Seg  7    93-138      6.29  374.52  0.00056       22.5%     52.86
  WD 4:  Seg 11   142-181      8.27  456.16  4.4e-05       37.5%     56.01
  WD 5:  Seg 15   185-223      9.08  489.87  1.6e-05       32.5%     58.00
  WD 6:  Seg 19   227-267      7.85  438.94  7.6e-05       27.5%     56.96
  WD 7:  Seg 23   268-310      7.04  405.35  0.00021       22.5%     55.62
  WD 8:  Seg 27   315-353      9.06  488.88  1.6e-05       30.0%     56.37
  WD 9:  Seg 31   354-394      5.14  326.94  0.00244       15.0%     49.96
  WD10:  Seg 35   398-436      4.29  291.70  0.00727        5.0%     40.40
  WD11:  Seg 39   437-474      6.60  387.44  0.00037       10.0%     53.55
  WD12:  Seg 43   475-517      7.76  435.19  8.5e-05       27.5%     55.39
  WD13:  Seg 47   518-561      8.34  459.15  4.0e-05       32.5%     55.56
  WD14:  Seg 51   566-604      7.10  408.05  0.00020       17.5%     54.89

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   13-50     -N---I----YA---TLPR--TQRGQPIVLGADPKGK-NFLYTN---GNSVIIRN
   WD 2   56-92     ----------IA---DVYT--EHSCAVNVAKYSPSGF-YIASGDA--SGKIRIWD
   WD 3   93-138    TV---NKEHLLK---NEFQ--PIAGPIKDISWSPDNQ-RIVAVGEGRERFGHVFM
   WD 4  142-181    -G---T----SV---GEIS--GQSKSINSADFRPARPFRIVTGSE--DNTIAVFE
   WD 5  185-223    -F---K----FK---MTKQ--DHSRFVQAVRYSPDGK-FFASAGF--DGKVFLYD
   WD 6  227-267    -S---E----LV---GEFGSPAHKGGVYALAWKPDST-QLLTCSG--DKTCRLWT
   WD 7  268-310    VE---S-RELVS---EFVM--GTTVDDQQVSCLWQGD-NLITVSL--SGVITYLN
   WD 8  315-353    -S---K----PL---RVVK--GHNKPITVLGLSDDRS-TIYTGSH--DGVVTNWN
   WD 9  354-394    SGSGTN----DR---ITGT--GHGNQINGI--AAWGD-FVYTCGI--DDSLRQFS
   WD10  398-436    -N---S----YT---DYVV--KLNCQPRGLAILRNEN-IIALACI--KELTLVQD
   WD11  437-474    -----Q----KK---IFSL--PIKYEASSIAVNADTS-DVAVGGD--DQKLHIYT
   WD12  475-517    LK---G----GVLEPKVEL--DHLGAVTDVSYSPDLK-YLVACDA--HRKVVLYS
   WD13  518-561    VE---EYKPAHN---KEWG--FHSARVNTVAWSPNSL-LVASGSL--DTTIIIWS
   WD14  566-604    -A---K----HT---IIKN--AHPQSQITRLVWLDNN-TVISTGQ--DCNTKVWH

   WD40 Template    TG---E----CL---RTLS--GHTSGVTSVSFSPDGK-RLVSGSE--DGTIKVWD