Input parameters:

  Query = FBpp0075582 (Len=604)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0075582, Len=604):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSQQAKNENIYATLPRTQRGQPIVLGADPKGKNFLYTNGNSVIIRNIENPAIADVYTEHSCAVNVAKYSPSGFYIASGDA 80  
WD40-rpts               (________________WD 1_______________)   (_________________WD 2_________

Query       81 SGKIRIWDTVNKEHLLKNEFQPIAGPIKDISWSPDNQRIVAVGEGRERFGHVFMSETGTSVGEISGQSKSINSADFRPAR 160 
WD40-rpts      _______)(____________________WD 3____________________)   (_________________WD 4_

Query      161 PFRIVTGSEDNTIAVFEGPPFKFKMTKQDHSRFVQAVRYSPDGKFFASAGFDGKVFLYDGTSSELVGEFGSPAHKGGVYA 240 
WD40-rpts      ________________)   (_________________WD 5________________)   (_________________

Query      241 LAWKPDSTQLLTCSGDKTCRLWTVESRELVSEFVMGTTVDDQQVSCLWQGDNLITVSLSGVITYLNVADPSKPLRVVKGH 320 
WD40-rpts      _WD 6_________________)(___________________WD 7__________________)    (_________

Query      321 NKPITVLGLSDDRSTIYTGSHDGVVTNWNSGSGTNDRITGTGHGNQINGIAAWGDFVYTCGIDDSLRQFSVEGNSYTDYV 400 
WD40-rpts      ________WD 8________________)(__________________WD 9_________________)          

Query      401 VKLNCQPRGLAILRNENIIALACIKELTLVQDQKKIFSLPIKYEASSIAVNADTSDVAVGGDDQKLHIYTLKGGVLEPKV 480 
WD40-rpts                                     (_________________WD10________________)(_________

Query      481 ELDHLGAVTDVSYSPDLKYLVACDAHRKVVLYSVEEYKPAHNKEWGFHSARVNTVAWSPNSLLVASGSLDTTIIIWSVAN 560 
WD40-rpts      __________WD11__________________)(___________________WD12___________________)   

Query      561 PAKHTIIKNAHPQSQITRLVWLDNNTVISTGQDCNTKVWHVENI 604 
WD40-rpts       (_________________WD13________________)    

13 WD40-repeats found in QUERY=FBpp0075582 (Len=604):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    10-46       4.68  307.97  0.00440        7.5%     39.76
  WD 2:  Seg  5    50-88       8.92  483.22  1.9e-05       27.5%     46.74
  WD 3:  Seg  8    89-134      6.29  374.33  0.00056       22.5%     53.17
  WD 4:  Seg 12   138-177      8.29  457.28  4.3e-05       37.5%     56.61
  WD 5:  Seg 16   181-219      9.09  490.25  1.5e-05       32.5%     58.25
  WD 6:  Seg 20   223-263      7.85  438.91  7.6e-05       27.5%     56.40
  WD 7:  Seg 24   264-306      7.04  405.34  0.00021       22.5%     55.91
  WD 8:  Seg 28   311-349      9.11  490.82  1.5e-05       30.0%     56.02
  WD 9:  Seg 32   350-390      5.17  328.02  0.00236       15.0%     50.92
  WD10:  Seg 40   432-470      6.99  403.44  0.00023       12.5%     54.24
  WD11:  Seg 44   471-513      7.80  436.82  8.1e-05       27.5%     55.60
  WD12:  Seg 48   514-557      8.35  459.55  4.0e-05       32.5%     55.67
  WD13:  Seg 52   562-600      7.12  408.68  0.00019       17.5%     54.62

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   10-46     -----I----YA---TLPR--TQRGQPIVLGADPKGK-NFLYTN---GNSVIIRN
   WD 2   50-88     -P---A----IA---DVYT--EHSCAVNVAKYSPSGF-YIASGDA--SGKIRIWD
   WD 3   89-134    TV---NKEHLLK---NEFQ--PIAGPIKDISWSPDNQ-RIVAVGEGRERFGHVFM
   WD 4  138-177    -G---T----SV---GEIS--GQSKSINSADFRPARPFRIVTGSE--DNTIAVFE
   WD 5  181-219    -F---K----FK---MTKQ--DHSRFVQAVRYSPDGK-FFASAGF--DGKVFLYD
   WD 6  223-263    -S---E----LV---GEFGSPAHKGGVYALAWKPDST-QLLTCSG--DKTCRLWT
   WD 7  264-306    VE---S-RELVS---EFVM--GTTVDDQQVSCLWQGD-NLITVSL--SGVITYLN
   WD 8  311-349    -S---K----PL---RVVK--GHNKPITVLGLSDDRS-TIYTGSH--DGVVTNWN
   WD 9  350-390    SGSGTN----DR---ITGT--GHGNQINGI--AAWGD-FVYTCGI--DDSLRQFS
   WD10  432-470    DQ---K----KI---FSL---PIKYEASSIAVNADTS-DVAVGGD--DQKLHIYT
   WD11  471-513    LK---G----GVLEPKVEL--DHLGAVTDVSYSPDLK-YLVACDA--HRKVVLYS
   WD12  514-557    VE---EYKPAHN---KEWG--FHSARVNTVAWSPNSL-LVASGSL--DTTIIIWS
   WD13  562-600    -A---K----HT---IIKN--AHPQSQITRLVWLDNN-TVISTGQ--DCNTKVWH

   WD40 Template    TG---E----CL---RTLS--GHTSGVTSVSFSPDGK-RLVSGSE--DGTIKVWD