Input parameters:
Query = FBpp0075751 (Len=350)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (FBpp0075751, Len=350):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKQKDLKRAYNNVLAQAISGSKQYLFAGNLFGDIFVLRIKELDKGSEEPPGKLKIFPQGSDVDINYLAFHRDFLIVGAVG 80
WD40-rpts (________________WD 1________________) (__________
Query 81 LIYGLEWNEEEESLATKRSWEVKIPMQVDAVEVPDVNSMWLDSENSILFAGCGDGVIYQVSLEDGRIQREYRGHTDYVHS 160
WD40-rpts ___WD 2_____________)(_________________WD 3_________________) (_______________
Query 161 VVGNANGQIFSGAEDGTVRVWSTKQQQHTSMLEPYKNPNLLRPDWGKWIGAVAVNEDWLLCGGGPKASIFHLRSMESTCV 240
WD40-rpts _WD 4________________) (______________________WD 5_____________________)
Query 241 FSFPGRVHLCDFVDDCVLIGGEHNHVQSYTLNGVLQANIPVEHTACYSAVWQTSPIKFISIAGFSNKLHILKDFRFLDSK 320
WD40-rpts (__________________WD 6__________________)
Query 321 IEMYGNVEGEENDPEEEDELIEKPLTVEAA 350
WD40-rpts
6 WD40-repeats found in QUERY=FBpp0075751 (Len=350):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-38 7.87 439.73 7.4e-05 20.0% 47.78
WD 2: Seg 6 70-101 3.04 240.31 0.03536 10.0% 29.02
WD 3: Seg 9 102-141 7.48 423.65 0.00012 17.5% 50.98
WD 4: Seg 13 145-182 9.01 486.69 1.7e-05 42.5% 53.83
WD 5: Seg 17 186-234 5.92 359.25 0.00090 10.0% 35.50
WD 6: Seg 25 272-313 7.49 423.85 0.00012 15.0% 42.76
Multiple sequence alignment of 6 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-38 MKQ--KDLKRAYNN----------VLAQAI--SGSKQYLFAGNLFGDIFVLR
WD 2 70-101 HRDFL--IVGAVGL----------IYGLEW--NEE------EESLATKRSWE
WD 3 102-141 VKIPMQVDAVEVPD----------VNSMWL--DSENSILFAGCGDGVIYQVS
WD 4 145-182 -GRIQREYRGHTDY----------VHSVVG--NANGQ-IFSGAEDGTVRVWS
WD 5 186-234 -QQHTSMLEPYKNPNLLRPDWGKWIGAVAV--NEDWLLCGGGPKASIFHLRS
WD 6 272-313 NGVLQANIPVEHTA----------CYSAVWQTSPIKFISIAGFSNKLHILKD
WD40 Template TGECLRTLSGHTSG----------VTSVSF--SPDGKRLVSGSEDGTIKVWD