Input parameters:

  Query = FBpp0076028 (Len=942)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0076028, Len=942):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDLPLPILIPSSDEVYVISDSDDSDSDDIRNELMKLEDNKDKPKNKERQKSKNENSQIKMNKWYLKEFEDLMGLEIACSD 80  
WD40-rpts                                                                                      

Query       81 DEDDIDDRNSEIWSSSESDKISDSDDSNSDGSPTEWINRIKNVNLFPFNKSAEDEKPKACEELPSIPVFTGPMPSMPIYD 160 
WD40-rpts                                                                                      

Query      161 EETCQFEMVPPIIQPDLIKEVTDAEMPIELDKSDSELEKEKLKADEDDNFSDSNTSSSFSLSSLDDYDYGETDLDEQHNE 240 
WD40-rpts                                                                                      

Query      241 NKCTYWEEMSLRPVDKGEVSQEELMAILNEDESSPDHRSECDIDEAIRTRDGSDFYEDSAQFLENMENVSLLVIKEDSVF 320 
WD40-rpts                                                                                      

Query      321 ADYEFAVKKLIKLIQSTPSHYKYEIYILLYPLLVLTYLQMMASDKIQKARMLLVRFQDHLDDSYISRIIKLREISKPAEV 400 
WD40-rpts                                                                                      

Query      401 PNKARKLLAGLEKVKIEMSEGAFRQLLLCTEEWTRGQQEKLLSHFQIQPYSEDDKPQQRFAIGQPLLEPIWYGAPEPLHK 480 
WD40-rpts                                                                                      

Query      481 KDFAARPFFQKRRKKRSEPQLSDNLHLPPVNRVYNPIPNKMDLLHMKSDEQYRMKLDRNNLPSTYLYTTSPSDEVVICAT 560 
WD40-rpts                      (_________________WD 1_________________)      (_________________

Query      561 FSEGNSMLALGTVSSKVYVFSLKPSKLVQVKAAQWLKNLDTGMAGVDKDMIDPIKKFTRRTLYGHQGPVYGCSFNPEDRF 640 
WD40-rpts      WD 2________________)(_____________WD 3____________)   (_________________WD 4___

Query      641 LITCSEDFSVRLWCLLSWSCVVIFSGHLAPVCFVVFAPRGYYFATASDDCTARVWMQDNTKPARILQGHLAELGVCLFHP 720 
WD40-rpts      _____________)   (_________________WD 5________________)   (_________________WD 

Query      721 NRHYMATGSADCTVRIWDIVKAVQVRIFRGHKSRITALIYSICGRYLVSGGDDNLIMIWDTANEILMQFFDHHKASINTM 800 
WD40-rpts      6________________)   (_________________WD 7________________)   (________________

Query      801 EISLDNNILVVGGQDCQLTLWDFEQVIKNYLNRAKISMKNQAGTQESSANNLLVSSFFTKGEPFYMIRFTRRNLLLGFCV 880 
WD40-rpts      _WD 8________________)(___________________WD 9___________________)         (____

Query      881 TPREFENDVLDVKLNQNKHKEEKKKELGEWLDFLDTIKLKACYDLKDEINLDTSQVEKENKS 942 
WD40-rpts      _____________WD10_________________)                           

10 WD40-repeats found in QUERY=FBpp0076028 (Len=942):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   497-536      3.22  247.79  0.02814       17.5%     15.52
  WD 2:  Seg  6   543-581      6.86  398.08  0.00027       22.5%     55.57
  WD 3:  Seg 10   582-612      3.19  246.58  0.02920       15.0%     32.88
  WD 4:  Seg 13   616-654      9.49  506.67  9.2e-06       35.0%     52.21
  WD 5:  Seg 17   658-696      9.15  492.42  1.4e-05       35.0%     49.43
  WD 6:  Seg 21   700-738      9.39  502.57  1.0e-05       30.0%     51.77
  WD 7:  Seg 25   742-780      9.93  524.79  5.3e-06       37.5%     54.39
  WD 8:  Seg 29   784-822      9.01  487.02  1.7e-05       22.5%     50.48
  WD 9:  Seg 33   823-866      4.20  287.98  0.00816       12.5%     30.39
  WD10:  Seg 36   876-915      4.56  303.16  0.00510       15.0%     28.73

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  497-536    -SEP----QLSDNLHLPPVNRVYNPIPNKMDLLHMKSDE-QYRMKL
   WD 2  543-581    -STY----LYTTSPSDEVVICATFS-EGNSMLALGTVSS-KVYVFS
   WD 3  582-612    -------------LKPSKLVQVKAA-QWLKNLDTGMAGV-DKDMID
   WD 4  616-654    -KFT----RRTLYGHQGPVYGCSFN-PEDRFLITCSEDF-SVRLWC
   WD 5  658-696    -WSC----VVIFSGHLAPVCFVVFA-PRGYYFATASDDC-TARVWM
   WD 6  700-738    -TKP----ARILQGHLAELGVCLFH-PNRHYMATGSADC-TVRIWD
   WD 7  742-780    -AVQ----VRIFRGHKSRITALIYS-ICGRYLVSGGDDN-LIMIWD
   WD 8  784-822    -EIL----MQFFDHHKASINTMEIS-LDNNILVVGGQDC-QLTLWD
   WD 9  823-866    FEQVIKNYLNRAKISMKNQAGTQES-SANNLLVSSFFTK-GEPFYM
   WD10  876-915    -LGF----CVTPREFENDVLDVKLN-QNKHKEEKKKELGEWLDFLD

   WD40 Template    TGEC----LRTLSGHTSGVTSVSFS-PDGKRLVSGSEDG-TIKVWD