Input parameters:

  Query = FBpp0076386 (Len=1169)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0076386, Len=1169):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRGVLKWLERIEFPNSKDNEISVHNVCYAPDGSQLVVAAGDRLLIYDPNDGSLLNTLKAHKDTVNCVAYSRDGKRFASGA 80  
WD40-rpts            (__________________WD 1__________________)  (_________________WD 2________

Query       81 SDKMVIVWSPQLEGLLKYSHGDSIQCMSFNPVSHHLASCSLSDFAFWSADQKAVQKYKISARVNGCSWTNDGQYLILGLA 160 
WD40-rpts      ________)(_________________WD 3________________)(_________________WD 4__________

Query      161 NGTISIRNKLGEEKGRIDRPGGPNSNVFSVQCCPASGPGSVDTIGVVDWSQTLSFHTLSGQMIGKERTLGFDPLCLQYFP 240 
WD40-rpts      _______)     (___________________WD 5___________________)  (_________________WD 

Query      241 NGEFCLVGGCTGGLHFFTREGIRLGTLGDTFDTWIWTVALHPNGQSYTIGCQDGTLACFNIASSTVHALYRERYAFRENM 320 
WD40-rpts      6________________)   (_________________WD 7________________)                    

Query      321 CDVIIQHLISGQKVRIKCRDLVQKIAIYRNRLAVQLPERVVLYELSSGEDQPMHYKVREKIQQKFDCSLLVVCGRHIVLC 400 
WD40-rpts                                                                                      

Query      401 QEKRLQCLDFMGVLQREWIMDSFIRYIKVTGGPVGREGLMVGLKNGQVFRIFLNNSLPLLITTAVSAVRCLDINSKRSKI 480 
WD40-rpts                                                          (__________________WD 8_____

Query      481 AVVDDVGRLVVRDVINDTILYQDTGVNSVTWNTHLDSMLCYTHTTGGLSVRVGNLPPRAPQNMHGVVVGLCGATAFCLRG 560 
WD40-rpts      ____________)                                                                   

Query      561 NIMHNTPLALGSTMWQFIEAGLFDEAYQVACLGVTTSDWEGLAQSALEALHINIARDAYVKVRNLPWLKLIGELRDQQQR 640 
WD40-rpts                                                                                      

Query      641 SAVPKEVLLAENCAFAGKFKEAARLFLKCGQSSRALEMYTDLRMFDLAQEYIKDGTDQEKKELVRKRAEWAYSVKEPRAA 720 
WD40-rpts                                                                                      

Query      721 AELLLSAGENQKAIDIVAEQGWADVLYDIGRRLSLTERDSLESVAQNLKTLKALPLAAEIFKKLGDEAQVVQLHIEVRDW 800 
WD40-rpts                                                                                      

Query      801 PEAFRLAESLPELLPTVHYQHGQWLAETDQFIEAHQAYIKAGRTKEANRLLKQLSNTAIVEERYLDASYFYWLLAKQHLD 880 
WD40-rpts                                                                                      

Query      881 VYHAKEEQNPVDHHLTEYKNHLRVAKVYYAYSVIYSYMKEPFTTHSPVSLFNVSRFILNEVEHKGVPKGVSMFSVLFTLA 960 
WD40-rpts                                                                                      

Query      961 KQAKFLQANKLCLLINKRLQSLKPPAGVQEQIDLNFLNSKACKSGFNDPEELLPLCYKCSNYSQHLNSNCCPTCRQDYIF 1040
WD40-rpts                                                                                      

Query     1041 SFVSFEILPLVQFYPEVDISDAEAERLLLAPAKHAEDSDPFNEDVASALPLSLDRNGLRAIDPNHVLILKRRGKNVRNVY 1120
WD40-rpts                                                                                      

Query     1121 YRNILPDLQVTYCPQCLLLFYAEDFELQVLQKGHCPFCHTSSEKLMEDF 1169
WD40-rpts                                                       

8 WD40-repeats found in QUERY=FBpp0076386 (Len=1169):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2     7-48       4.78  311.91  0.00389       22.5%     42.74
  WD 2:  Seg  5    51-89       9.25  496.94  1.2e-05       42.5%     54.42
  WD 3:  Seg  9    90-128      5.08  324.64  0.00262       20.0%     53.88
  WD 4:  Seg 13   129-168      6.96  402.12  0.00024       22.5%     55.00
  WD 5:  Seg 17   174-217      3.27  249.83  0.02643       17.5%     44.16
  WD 6:  Seg 21   220-258      5.13  326.38  0.00248       12.5%     54.19
  WD 7:  Seg 25   262-300      6.19  370.50  0.00063       17.5%     53.78
  WD 8:  Seg 44   453-493      4.71  309.13  0.00424       15.0%     53.19

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-48     WLERI-EFPNSKDNEISVHNVCYAPDG-----SQLVVAAGDRLLIYDP
   WD 2   51-89     -GSLL-N--TLKAHKDTVNCVAYSRDG-----KRFASGASDKMVIVWS
   WD 3   90-128    PQLEG-L--LKYSHGDSIQCMSFNPVS-----HHLASCSLS-DFAFWS
   WD 4  129-168    ADQKA-V--QKYKISARVNGCSWTNDG-----QYLILGLANGTISIRN
   WD 5  174-217    -KGRI-D--RPGGPNSNVFSVQCCPASGPGSVDTIGVVDWSQTLSFHT
   WD 6  220-258    -GQMI-G--KERTLGFDPLCLQYFPNG-----EFCLVGGCTGGLHFFT
   WD 7  262-300    -IRLG-T--LGDTFDTWIWTVALHPNG-----QSYTIGCQDGTLACFN
   WD 8  453-493    LNNSLPL--LITTAVSAVRCLDINSKR-----SKIAVVDDVGRLVVRD

   WD40 Template    TGECL-R--TLSGHTSGVTSVSFSPDG-----KRLVSGSEDGTIKVWD