Input parameters:

  Query = FBpp0076414 (Len=377)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0076414, Len=377):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMSLLGRTDVDAGEVFVNFNQNITSLAVATSGGYSLYSLGSVDSTLDKIYHTKSDELFLIERLFESSLVAIVSQRAPRKL 80  
WD40-rpts      (________________WD 1________________)(____________________WD 2_________________

Query       81 KVCHFKKQSEICNYSYANTILAVKLNRERLIVCLEESLYIHNIQDMKVVHTIRDTPCNPQGLCALSSSSEHCYLAYPGSV 160 
WD40-rpts      ___)(________________WD 3________________)(_____________________WD 4____________

Query      161 TAGEVQIFDAINLHAKTMIPAHDTPLAALAFSPSGTEIATASERGTVIRVFSSQDGSRLFELRRGLKRCVSIVSLSFSTC 240 
WD40-rpts      ________)   (_________________WD 5_________________)(____________________WD 6___

Query      241 AEYLVSSSNTETVHIFRLDRSATETAEGHGSKQSSDDWMGYSFFRFLSKTVTSYLPTQVTDVFSQGRAFASVTLPEAGVR 320 
WD40-rpts      ________________)  (____________________WD 7___________________)________________

Query      321 RMCAIATIQKQLRLLIASQDGYLYVYSIPTVEGAECQLIKRHDLRLEDHYAMDIKGA 377 
WD40-rpts      ___WD 8___________________)                              

8 WD40-repeats found in QUERY=FBpp0076414 (Len=377):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       5.21  329.85  0.00223       15.0%     38.75
  WD 2:  Seg  4    39-84       4.37  295.33  0.00650       20.0%     32.50
  WD 3:  Seg  8    85-122      2.91  234.88  0.04172        2.5%     39.09
  WD 4:  Seg 12   123-169      4.38  295.76  0.00642       17.5%     42.63
  WD 5:  Seg 16   173-212      7.80  436.79  8.1e-05       27.5%     56.38
  WD 6:  Seg 20   213-257      6.82  396.20  0.00028       27.5%     48.89
  WD 7:  Seg 24   260-304      3.12  243.37  0.03221       22.5%      4.85
  WD 8:  Seg 25   304-347      5.69  349.68  0.00121       15.0%     53.39

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-38     -M----M-----SLLGRT------DVDAGEVFVN------FNQNITSLAVAT-S--GG-YSLYS
   WD 2   39-84     LG----S-----VDSTLDKIYHTKSDELFLIERL------FESSLVAIVSQRAP--RK-LKVCH
   WD 3   85-122    FK----K-----QSEICN-----YSYANTILAVK------LNRERLIVCL---E--ES-LYIHN
   WD 4  123-169    IQ----DMKVVHTIRDTP------CNPQGLCALS------SSSEHCYLAYPGSVTAGE-VQIFD
   WD 5  173-212    -L----H-----AKTMIP------AHDTPLAALA------FSPSGTEIATASER--GTVIRVFS
   WD 6  213-257    SQ----DGSRLFELRRGL------KRCVSIVSLS------FSTCAEYLVSSSNT--ET-VHIFR
   WD 7  260-304    -R----S-----ATETAE------GHGSKQSSDDWMGYSFFRFLSKTVTSYLPT--QV-TDVFS
   WD 8  304-347    SQGRAFA-----SVTLPE------AGVRRMCAIA------TIQKQLRLLIASQD--GY-LYVYS

   WD40 Template    TG----E-----CLRTLS------GHTSGVTSVS------FSPDGKRLVSGSED--GT-IKVWD