Input parameters:
Query = FBpp0076415 (Len=377)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (FBpp0076415, Len=377):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MMSLLGRTDVDAGEVFVNFNQNITSLAVATSGGYSLYSLGSVDSTLDKIYHTKSDELFLIERLFESSLVAIVSQRAPRKL 80
WD40-rpts (________________WD 1________________)(____________________WD 2_________________
Query 81 KVCHFKKQSEICNYSYANTILAVKLNRERLIVCLEESLYIHNIQDMKVVHTIRDTPCNPQGLCALSSSSEHCYLAYPGSV 160
WD40-rpts ___)(________________WD 3________________)(_____________________WD 4____________
Query 161 TAGEVQIFDAINLHAKTMIPAHDTPLAALAFSPSGTEIATASERGTVIRVFSSQDGSRLFELRRGLKRCVSIVSLSFSTC 240
WD40-rpts ________) (_________________WD 5_________________)(____________________WD 6___
Query 241 AEYLVSSSNTETVHIFRLDRSATETAEGHGSKQSSDDWMGYSFFRFLSKTVTSYLPTQVTDVFSQGRAFASVTLPEAGVR 320
WD40-rpts ________________) (____________________WD 7___________________)________________
Query 321 RMCAIATIQKQLRLLIASQDGYLYVYSIPTVEGAECQLIKRHDLRLEDHYAMDIKGA 377
WD40-rpts ___WD 8___________________)
8 WD40-repeats found in QUERY=FBpp0076415 (Len=377):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-38 5.21 329.85 0.00223 15.0% 38.75
WD 2: Seg 4 39-84 4.37 295.33 0.00650 20.0% 32.50
WD 3: Seg 8 85-122 2.91 234.88 0.04172 2.5% 39.09
WD 4: Seg 12 123-169 4.38 295.76 0.00642 17.5% 42.63
WD 5: Seg 16 173-212 7.80 436.79 8.1e-05 27.5% 56.38
WD 6: Seg 20 213-257 6.82 396.20 0.00028 27.5% 48.89
WD 7: Seg 24 260-304 3.12 243.37 0.03221 22.5% 4.85
WD 8: Seg 25 304-347 5.69 349.68 0.00121 15.0% 53.39
Multiple sequence alignment of 8 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-38 -M----M-----SLLGRT------DVDAGEVFVN------FNQNITSLAVAT-S--GG-YSLYS
WD 2 39-84 LG----S-----VDSTLDKIYHTKSDELFLIERL------FESSLVAIVSQRAP--RK-LKVCH
WD 3 85-122 FK----K-----QSEICN-----YSYANTILAVK------LNRERLIVCL---E--ES-LYIHN
WD 4 123-169 IQ----DMKVVHTIRDTP------CNPQGLCALS------SSSEHCYLAYPGSVTAGE-VQIFD
WD 5 173-212 -L----H-----AKTMIP------AHDTPLAALA------FSPSGTEIATASER--GTVIRVFS
WD 6 213-257 SQ----DGSRLFELRRGL------KRCVSIVSLS------FSTCAEYLVSSSNT--ET-VHIFR
WD 7 260-304 -R----S-----ATETAE------GHGSKQSSDDWMGYSFFRFLSKTVTSYLPT--QV-TDVFS
WD 8 304-347 SQGRAFA-----SVTLPE------AGVRRMCAIA------TIQKQLRLLIASQD--GY-LYVYS
WD40 Template TG----E-----CLRTLS------GHTSGVTSVS------FSPDGKRLVSGSED--GT-IKVWD