Input parameters:

  Query = FBpp0076646 (Len=742)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0076646, Len=742):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGDSHDVCRQLLPRAIFGINGKVENGVRQHPVTGSIIFALGNKIGIADYKKNTQEFVAGHTNTISCLDLSKSGKYMASGQ 80  
WD40-rpts              (_________________WD 1_________________)  (___________________WD 2______

Query       81 INHMGFRGYVIIWNYDQRKEIARHDLHKVSVQAICFTAQDRCVVSIGGVDDGSVIVFDMEAFSPICQTPASRAISGNALT 160 
WD40-rpts      _____________)   (__________________WD 3_________________)        (_____________

Query      161 VRPLHNNPYFFVTAGDRHLRLWSILREEKKLYVQDVLMASKTRVFYCARINKTDEFAYLGTGTGDIVKIVLNCCDRDHVS 240 
WD40-rpts      ___WD 4_______________)          (_________________WD 5________________)        

Query      241 KQGSTSCILGAFGTHNPRKPTGRDCNRYVNGVRALYVLEGGRLLIGAGNGDIELVEERTDVPLINFRDYPGPTWPYLRTL 320 
WD40-rpts                        (________________WD 6________________)          (_____________

Query      321 KKTHVSGRISSFVRSKTDMFYICTDTNEIYGLNIKTWVLKLLRTCHTKSVYCITFPKNYSGVFATSGKECIRIWSSGRKQ 400 
WD40-rpts      ________WD 7____________________)   (_________________WD 8________________)   (_

Query      401 ELLRIMVYNFNCACVRFTHDGTSIVSVWNDGIIRAFTPITGRLIYAIPNAHNKGCSALAVASSGRLIVTGGIEGQVRVWK 480 
WD40-rpts      ________________WD 9________________)   (_________________WD10_________________)

Query      481 IDPYRQDLVGVLKDHSGPITSLDINYLDTEVISACTDGSCVIWDIKRMTRKQVVTANTQFMSASYFPTGVQVITCGSDGR 560 
WD40-rpts           (_________________WD11________________)   (________________WD12____________

Query      561 IIYWMVYNGALIRELTASKKSSVNCLAINETGDYFITVGSDLQVKLWDYNSGAVVGIGSEHASSVISCAYSPCMTMFVTG 640 
WD40-rpts      ____)   (_________________WD13_________________)   (_________________WD14_______

Query      641 STDGSLIIWDVPRDFWGRPNPPDVTKYSLPKTSSKTRMSDVPSRVNSGTNLKTTKGENIDGLLKATPKDDLCCVECPPCA 720 
WD40-rpts      _________)(_____________________WD15_____________________)                      

Query      721 KKDTKGVDPYAECGIVPDVRKC 742 
WD40-rpts                            

15 WD40-repeats found in QUERY=FBpp0076646 (Len=742):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     9-48       5.77  352.84  0.00109       17.5%     44.05
  WD 2:  Seg  5    51-94       7.18  411.23  0.00018       25.0%     49.27
  WD 3:  Seg  9    98-138      7.47  423.31  0.00012       25.0%     48.21
  WD 4:  Seg 14   147-183      6.33  376.25  0.00053        7.5%     38.81
  WD 5:  Seg 17   194-232      6.48  382.43  0.00044       12.5%     41.62
  WD 6:  Seg 23   259-296      6.15  368.59  0.00067       22.5%     42.87
  WD 7:  Seg 27   307-353      5.56  344.17  0.00143       12.5%     51.17
  WD 8:  Seg 31   357-395      8.02  445.82  6.1e-05       17.5%     55.69
  WD 9:  Seg 35   399-437      8.41  462.12  3.7e-05       25.0%     55.52
  WD10:  Seg 39   441-480      7.99  444.63  6.3e-05       22.5%     53.06
  WD11:  Seg 42   486-524      8.19  452.95  4.9e-05       22.5%     49.21
  WD12:  Seg 46   528-565      6.85  397.44  0.00027       22.5%     58.54
  WD13:  Seg 50   569-608      7.65  430.50  9.8e-05       25.0%     57.91
  WD14:  Seg 54   612-650      9.47  505.92  9.4e-06       37.5%     58.31
  WD15:  Seg 58   651-698      5.28  332.91  0.00203       17.5%     32.79

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    9-48     RQ-------LLP--------RAI-FG-INGKVENGVRQHPVTGSIIF--AL-G-----NKIGIAD
   WD 2   51-94     -K-------NTQ--------EFV-AG-HTNTI-SCLDLSKSGKYMAS--GQINHMGFRGYVIIWN
   WD 3   98-138    -R-------KEI--------ARH-DL-HKVSV-QAICFTAQDRCVVSIGGVDD-----GSVIVFD
   WD 4  147-183    Q----------T--------PAS-RA-ISGNA-LTVRPLHNNPYFFV--TAGD-----RHLRLWS
   WD 5  194-232    -Q-------DVL--------MAS-KT-RVFYC-ARINKTDEFAYLGT--GTGD-----IVKIVLN
   WD 6  259-296    -K-------PTG--------RDC-NR-YVNGV-RALYVLEGG-RLLI--GAGN-----GDIELVE
   WD 7  307-353    RDYPGPTWPYLR--------TLK-KT-HVSGR-ISSFVRSKTDMFYI--CTDT-----NEIYGLN
   WD 8  357-395    -W-------VLK--------LLR-TC-HTKSV-YCITFPKNYSGVFA--TSGK-----ECIRIWS
   WD 9  399-437    -K-------QEL--------LRI-MV-YNFNC-ACVRFTHDGTSIVS--VWND-----GIIRAFT
   WD10  441-480    -G-------RLI--------YAIPNA-HNKGC-SALAVASSGRLIVT--GGIE-----GQVRVWK
   WD11  486-524    -Q-------DLV--------GVL-KD-HSGPI-TSLDINYLDTEVIS--ACTD-----GSCVIWD
   WD12  528-565    -M-------TRK--------QVV-TA-NTQ-F-MSASYFPTGVQVIT--CGSD-----GRIIYWM
   WD13  569-608    -G-------ALI--------REL-TASKKSSV-NCLAINETGDYFIT--VGSD-----LQVKLWD
   WD14  612-650    -G-------AVV--------GIG-SE-HASSV-ISCAYSPCMTMFVT--GSTD-----GSLIIWD
   WD15  651-698    VP-------RDFWGRPNPPDVTK-YS-LPKTS-SKTRMSDVPSRVNS--GTNL-----KTTKGEN

   WD40 Template    TG-------ECL--------RTL-SG-HTSGV-TSVSFSPDGKRLVS--GSED-----GTIKVWD